PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0711s0021.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

HD-ZIP

Protein Properties

Length: 178aa MW: 20026.4 Da PI: 7.0308

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0711s0021.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.5	4.8e-18	16	69	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++++t+eq++ Le+ F n++++++ + +L+++l+L+ rq+ vW+qN+Ra++k Kalax.0711s0021.1.p 16 SKRRLTEEQIRLLETNFSFNKKLDQDLKYHLSQQLNLPPRQIAVWYQNKRARWK 69 56789************************************************9 PP
2	HD-ZIP_I/II	99.8	2.6e-32	17	107	3	93
HD-ZIP_I/II 3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 krrl++eq++lLE++F+ ++kL+++ K +l+++L+l prq+avW+qn+RAR+kt+ +E+d++a+++++ +++++n++Le+eve+L+eel+ Kalax.0711s0021.1.p 17 KRRLTEEQIRLLETNFSFNKKLDQDLKYHLSQQLNLPPRQIAVWYQNKRARWKTQAMESDHKAMQSKLVSVMSHNRKLEREVEKLQEELD 106 9**************************************************************************************997 PP HD-ZIP_I/II 93 e 93 + Kalax.0711s0021.1.p 107 Q 107 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.5E-18	8	76	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.58E-17	9	71	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.742	11	71	IPR001356	Homeobox domain
SMART	SM00389	1.1E-16	13	75	IPR001356	Homeobox domain
CDD	cd00086	1.72E-15	14	71	No hit	No description
Pfam	PF00046	3.2E-15	16	69	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	46	69	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009637	Biological Process	response to blue light
GO:0009646	Biological Process	response to absence of light
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 178 aa Download sequence Send to blast
MNQPRDTEKP DSGKGSKRRL TEEQIRLLET NFSFNKKLDQ DLKYHLSQQL NLPPRQIAVW 60 YQNKRARWKT QAMESDHKAM QSKLVSVMSH NRKLEREVEK LQEELDQARA MVHASSTSVP 120 AYSCAVSTSG EDEGGSSFLD RSECCLDNEL YACVAGVESR HQFLSVADGF GAFGPSI*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009800499.1	3e-43	PREDICTED: homeobox-leucine zipper protein ATHB-52-like
TrEMBL	A0A1J6IZQ9	1e-42	A0A1J6IZQ9_NICAT; Homeobox-leucine zipper protein athb-52
STRING	XP_009800499.1	1e-42	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53980.1	5e-33	homeobox protein 52

Link Out ? help Back to Top
Phytozome	Kalax.0711s0021.1.p