PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0718s0006.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 342aa    MW: 39197.7 Da    PI: 5.5252
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0718s0006.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.76.3e-194491148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         rg+WT eEd +l  +++q+G g+W++ ar  g++Rt+k+c++rw++yl
  Kalax.0718s0006.1.p 44 RGPWTDEEDHILSSYIAQHGEGRWNSLARSAGLNRTGKSCRLRWLNYL 91
                         89********************************************97 PP
2Myb_DNA-binding49.97.2e-1697140146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          rg+ + eE++l++d++ ++G++ W++Ia++++ gRt++++k++w++
  Kalax.0718s0006.1.p  97 RGNISLEEQLLILDLHSRWGNR-WSKIAKYLP-GRTDNEIKNYWRT 140
                          78899*****************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.283995IPR017930Myb domain
SuperFamilySSF466892.02E-3042138IPR009057Homeodomain-like
SMARTSM007172.0E-144393IPR001005SANT/Myb domain
PfamPF002496.1E-174491IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-224598IPR009057Homeodomain-like
CDDcd001674.65E-114691No hitNo description
SMARTSM007175.0E-1496144IPR001005SANT/Myb domain
PROSITE profilePS5129417.88596146IPR017930Myb domain
PfamPF002492.5E-1497140IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.5E-2299145IPR009057Homeodomain-like
CDDcd001676.26E-11101140No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MNYHQDGRGV FTANNNSSSS SSSSWSKQSQ EEEHEDVMME ELRRGPWTDE EDHILSSYIA  60
QHGEGRWNSL ARSAGLNRTG KSCRLRWLNY LRPDVRRGNI SLEEQLLILD LHSRWGNRWS  120
KIAKYLPGRT DNEIKNYWRT RVQKHAKQLK CDVNSQQFRD AMRYLWMPRL VERIHGAASA  180
ADDIHNTTTT CLFHDNNNNH TTAGFINPSG MMREDEPYGS YQQHQQVSPF SDLMDDYAPA  240
DDINSECYYN GGAGNDSAVK AVGFDCNNYI DQTGVMMGYG GGDQMHPNNN NNSSNRDNGW  300
VMMQSGDVSD SMWSLDDFWF NNSQPPQQEY HQQQFNTNSF S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-253513818120MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011027944.12e-91PREDICTED: transcription factor MYB108-like
TrEMBLB9HX628e-88B9HX62_POPTR; Uncharacterized protein
STRINGevm.TU.contig_30289.25e-89(Carica papaya)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G48000.15e-81myb domain protein 112