PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0727s0008.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

BBR-BPC

Protein Properties

Length: 301aa MW: 33534.4 Da PI: 10.7728

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0727s0008.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	302.1	2.1e-92	6	300	30	301
GAGA_bind 30 ssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvensla....salpvg..vqvlsgtksidslqq 113 ++++er++++rern+a++e k+a+a+rdma l+rd+a+++r++a ++rd+++++l+l+++s++ ++p++ ++v+ g+k++++ qq Kalax.0727s0008.1.p 6 AILSERNEAMRERNMAIAEIKQAIAQRDMAILERDAAVTDRDHARMQRDDAIAQLQLKTDSMNtsivIHNPSEsaMSVSLGAKQMQMQQQ 95 6789***************************************************999998888856665411455667777777766 PP GAGA_bind 114 lse....pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesader............. 186 +++ p+ ++ a++ re ++++p ++a ++a+++k+ k+ +++k+ +ka k+ +k +k + +v++++ + Kalax.0727s0008.1.p 96 QQRrqhlPNYSEVAFNPREVPFSDVFPQSTAGSKATRAKRGKRAKEKKTVSPNKAIKPARKIAKRRTRVSNKQLTATshhssdsgrsgnl 185 544555677777777777888888888777766666666666555555555555556666555555555444443225778899998877 PP GAGA_bind 187 skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeG 276 k+ + +l+ln+ lD+ +lPvP CsCtG+++ CYkWG GGWqSaCCtt++S+yPLP+++++r++R++grKmS+gaf+kl+ +La+eG Kalax.0727s0008.1.p 186 EKQIVLKGGLSLNELGLDDVNLPVPFCSCTGKPQSCYKWGKGGWQSACCTTALSMYPLPQMPNKRHSRMGGRKMSGGAFTKLITRLASEG 275 7777777899**************************************************************************** PP GAGA_bind 277 ydlsnpvDLkdhWAkHGtnkfvtir 301 yd+ p+DLk++WAkHGtn+++tir Kalax.0727s0008.1.p 276 YDITVPIDLKTYWAKHGTNRYITIR 300 **********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	7.8E-97	1	300	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	1.4E-80	6	300	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence Send to blast
MDPFFAILSE RNEAMRERNM AIAEIKQAIA QRDMAILERD AAVTDRDHAR MQRDDAIAQL 60 QLKTDSMNTS IVIHNPSESA MSVSLGAKQM QMQQQQQRRQ HLPNYSEVAF NPREVPFSDV 120 FPQSTAGSKA TRAKRGKRAK EKKTVSPNKA IKPARKIAKR RTRVSNKQLT ATSHHSSDSG 180 RSGNLEKQIV LKGGLSLNEL GLDDVNLPVP FCSCTGKPQS CYKWGKGGWQ SACCTTALSM 240 YPLPQMPNKR HSRMGGRKMS GGAFTKLITR LASEGYDITV PIDLKTYWAK HGTNRYITIR 300 *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016702980.1	1e-101	PREDICTED: protein BASIC PENTACYSTEINE6-like isoform X2
TrEMBL	A0A1U8KKL4	1e-100	A0A1U8KKL4_GOSHI; protein BASIC PENTACYSTEINE6-like isoform X2
STRING	Gorai.002G124900.1	1e-100	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42520.2	7e-72	basic pentacysteine 6

Link Out ? help Back to Top
Phytozome	Kalax.0727s0008.1.p