PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0728s0011.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NAC
Protein Properties Length: 504aa    MW: 56284.7 Da    PI: 4.6875
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0728s0011.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.31.2e-52181442128
                  NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                          ppGfrFhPtdeel+ +yLk+kv g++l+l ++i+e+d+yk++P+dLp + k++++++ w+fFs+rd+ky++g r+nrat++gyWkatgkd
  Kalax.0728s0011.1.p  18 PPGFRFHPTDEELILYYLKRKVCGRRLKL-DMISETDVYKWDPEDLPgQsKLQTGDRLWFFFSPRDRKYPNGARSNRATHHGYWKATGKD 106
                          8****************************.99**************96358899999********************************* PP

                  NAM  90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          +++++ +++ vglkktLvfy+grap+g++t+Wvmhey+l
  Kalax.0728s0011.1.p 107 RRITC-NSRPVGLKKTLVFYRGRAPTGTRTNWVMHEYTL 144
                          *****.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.02E-5714167IPR003441NAC domain
PROSITE profilePS5100554.23717167IPR003441NAC domain
PfamPF023659.6E-2818144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0070301Biological Processcellular response to hydrogen peroxide
GO:0005634Cellular Componentnucleus
GO:0005789Cellular Componentendoplasmic reticulum membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    Send to blast
MPSSSSRCIG GKKKQVWPPG FRFHPTDEEL ILYYLKRKVC GRRLKLDMIS ETDVYKWDPE  60
DLPGQSKLQT GDRLWFFFSP RDRKYPNGAR SNRATHHGYW KATGKDRRIT CNSRPVGLKK  120
TLVFYRGRAP TGTRTNWVMH EYTLDEEELK RCQNVGVYFA LYKVYMKSGP GPKNGEQYGA  180
PFKEEDWADE ECTEVGSNAV EVANNMPMDG MIRIGDNFIG VVDEVEPWNS SAESRALLQL  240
QSADCFHQDP VVHPVSQRSD MGCSFDYSQP VASHVVEAPD ISSGLNVDEL NNFLADGDFL  300
EANDLLGPEP ITWGDDNPLE NQWVDNTYDE LGEWDLFDDA SIFLHDTGAS DLFNGDDGML  360
NNFEYQPQLN DASNVTSELW VHEDPNINEH LSVQPGSIIG GNTSISTLQD NQNHNGSTSC  420
PQNRVTSALW AFVESIPTTP ASASESILLN KAFERVSSFR RLGAMNSLTV GDTKESAKHS  480
KSRGIILLSI VGALCAMIWV LMA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-471814416140Stress-induced transcription factor NAC1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00179DAPTransfer from AT1G34190Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002265611.11e-156PREDICTED: NAC domain-containing protein 17
TrEMBLA0A2N9H1E91e-161A0A2N9H1E9_FAGSY; Uncharacterized protein
STRINGVIT_18s0001g01820.t011e-156(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34190.11e-121NAC domain containing protein 17