PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0738s0018.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NF-YB
Protein Properties Length: 182aa    MW: 19742.9 Da    PI: 6.6252
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0738s0018.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB174.51.1e-5428122397
                NF-YB   3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyre 92 
                          eqdr+lPian+srimkk+lP+n+ki+kdak+tvqecvsefisf+tseasdkcq++krktingddll+a++tlGfe+y++pl+ yl++yre
  Kalax.0738s0018.1.p  28 EQDRYLPIANISRIMKKALPSNGKIAKDAKDTVQECVSEFISFITSEASDKCQKDKRKTINGDDLLHAMSTLGFENYIDPLRFYLSRYRE 117
                          9***************************************************************************************** PP

                NF-YB  93 legek 97 
                          leg++
  Kalax.0738s0018.1.p 118 LEGDT 122
                          ***97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.103.2E-5125132IPR009072Histone-fold
SuperFamilySSF471139.32E-4029144IPR009072Histone-fold
PfamPF008084.3E-283296IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006153.1E-196078No hitNo description
PROSITE patternPS0068506379IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006153.1E-197997No hitNo description
PRINTSPR006153.1E-1998116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MADVPNSPNA GSHDSGGGDH SPRPNVCEQD RYLPIANISR IMKKALPSNG KIAKDAKDTV  60
QECVSEFISF ITSEASDKCQ KDKRKTINGD DLLHAMSTLG FENYIDPLRF YLSRYRELEG  120
DTKGSVRGEG SARKDVGGGH MNSSAQQLAH QGSFTQAIHY MNSQSPTQHL VVPSVPGSEY  180
D*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B1e-4728117392Transcription factor HapC (Eurofung)
4g92_B1e-4728117392Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002278716.13e-91PREDICTED: nuclear transcription factor Y subunit B-1 isoform X1
RefseqXP_003633465.13e-91PREDICTED: nuclear transcription factor Y subunit B-1 isoform X1
RefseqXP_010658455.13e-91PREDICTED: nuclear transcription factor Y subunit B-1 isoform X1
SwissprotQ8VYK49e-70NFYB8_ARATH; Nuclear transcription factor Y subunit B-8
TrEMBLD7TMF33e-86D7TMF3_VITVI; Uncharacterized protein
STRINGVIT_13s0019g03600.t014e-87(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53340.11e-67nuclear factor Y, subunit B10
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]