PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0738s0018.3.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

NF-YB

Protein Properties

Length: 179aa MW: 19372.4 Da PI: 6.8783

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0738s0018.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	168.8	6.7e-53	28	120	3	95
NF-YB 3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyre 92 eqdr+lPian+srimkk+lP+n+ki+kdak+tvqecvsefisf+tseasdkcq++krktingddll+a++tlGfe+y++pl+ yl++yre Kalax.0738s0018.3.p 28 EQDRYLPIANISRIMKKALPSNGKIAKDAKDTVQECVSEFISFITSEASDKCQKDKRKTINGDDLLHAMSTLGFENYIDPLRFYLSRYRE 117 9****************************************************************************************9 PP NF-YB 93 leg 95 ++ Kalax.0738s0018.3.p 118 GDT 120 665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	4.4E-50	25	129	IPR009072	Histone-fold
SuperFamily	SSF47113	1.86E-38	29	145	IPR009072	Histone-fold
Pfam	PF00808	4.2E-28	32	96	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	3.0E-19	60	78	No hit	No description
PROSITE pattern	PS00685	0	63	79	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	3.0E-19	79	97	No hit	No description
PRINTS	PR00615	3.0E-19	98	116	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 179 aa Download sequence Send to blast
MADVPNSPNA GSHDSGGGDH SPRPNVCEQD RYLPIANISR IMKKALPSNG KIAKDAKDTV 60 QECVSEFISF ITSEASDKCQ KDKRKTINGD DLLHAMSTLG FENYIDPLRF YLSRYREGDT 120 KGSVRGEGSA RKDVGGGHMN SSAQLAHQGS FTQAIHYMNS QSPTQHLVVP SVPGSEYD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	7e-48	28	117	3	92	Transcription factor HapC (Eurofung)
4g92_B	7e-48	28	117	3	92	Transcription factor HapC (Eurofung)
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Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002278716.1	2e-89	PREDICTED: nuclear transcription factor Y subunit B-1 isoform X1
Refseq	XP_003633465.1	2e-89	PREDICTED: nuclear transcription factor Y subunit B-1 isoform X1
Refseq	XP_010658455.1	2e-89	PREDICTED: nuclear transcription factor Y subunit B-1 isoform X1
Swissprot	Q8VYK4	2e-66	NFYB8_ARATH; Nuclear transcription factor Y subunit B-8
TrEMBL	D7TMF3	5e-90	D7TMF3_VITVI; Uncharacterized protein
STRING	VIT_13s0019g03600.t01	9e-91	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G53340.1	1e-65	nuclear factor Y, subunit B10

Link Out ? help Back to Top
Phytozome	Kalax.0738s0018.3.p

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]