PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0738s0021.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family LBD
Protein Properties Length: 231aa    MW: 24934.2 Da    PI: 5.2053
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0738s0021.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260135.32.3e-42681671100
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                          +CaaCk+lrr+Ca++Cvlapyfp ++p kf ++h++FGasn++k+l++lpe++r da+ss+vyeA+ar+rdPvyG++g i +lq+q+++l
  Kalax.0738s0021.1.p  68 PCAACKILRRRCADKCVLAPYFPPTDPLKFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYEANARLRDPVYGCAGAICHLQRQVSEL 157
                          7***************************************************************************************** PP

               DUF260  91 kaelallkee 100
                          + ela++++e
  Kalax.0738s0021.1.p 158 QGELAKAQAE 167
                          ******9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.97367168IPR004883Lateral organ boundaries, LOB
PfamPF031952.7E-4268165IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005739Cellular Componentmitochondrion
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MESIISNGKT TPPALTITPT TFNSFSSSFS SSPSSSSSPP SSHSSPTTAL PPAYSPPPPQ  60
PQVIVMSPCA ACKILRRRCA DKCVLAPYFP PTDPLKFTIA HRVFGASNII KFLQELPESQ  120
RADAVSSMVY EANARLRDPV YGCAGAICHL QRQVSELQGE LAKAQAEIVA IQLQKSNLLT  180
LICMDDQDQH MFSYGQCVDD TNQNVSFDEL YGIGSFMDSS YANSLESLWA *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-416716910112LOB family transfactor Ramosa2.1
5ly0_B2e-416716910112LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017246117.15e-80PREDICTED: LOB domain-containing protein 1-like
SwissprotQ9LQR02e-73LBD1_ARATH; LOB domain-containing protein 1
TrEMBLA0A162A9931e-78A0A162A993_DAUCS; Uncharacterized protein
STRINGAES674101e-77(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.13e-75LOB domain-containing protein 1