PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0744s0001.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 175aa    MW: 19338.7 Da    PI: 5.0164
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0744s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2414.9e-1312551056
                  AP2 10 kkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                         +++g+Wv+eIr ps+   + r++lg+f  ae+Aa+a++ a  +++g+
  Kalax.0744s0001.1.p 12 RSWGKWVSEIRQPSK---KSRIWLGTFPNAEMAARAHDVASFAFKGH 55
                         57**********965...6********************99888775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103219.177562IPR001471AP2/ERF domain
PRINTSPR003676.3E-6617IPR001471AP2/ERF domain
SuperFamilySSF541713.01E-18763IPR016177DNA-binding domain
SMARTSM003803.1E-251168IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.5E-261163IPR001471AP2/ERF domain
CDDcd000181.84E-261164No hitNo description
PfamPF008472.5E-71255IPR001471AP2/ERF domain
PRINTSPR003676.3E-62844IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MRSGQLTGEL MRSWGKWVSE IRQPSKKSRI WLGTFPNAEM AARAHDVASF AFKGHSAHLN  60
FPHLITCLPR PASLLPSHIR AAASKAAAMI HPGSDPADAL SDDADQESEQ GSYWNEMGAS  120
SELVELPSLL AESEASGQDV QSRESVVAME WRPDQCWFWG DMRDIDWFVV CTHE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-134631373Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006426907.15e-37ethylene-responsive transcription factor ERF036
TrEMBLV4SHT91e-35V4SHT9_9ROSI; Uncharacterized protein
STRINGXP_006426907.12e-36(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32800.12e-32ERF family protein