PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0750s0012.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

C2H2

Protein Properties

Length: 472aa MW: 50010.3 Da PI: 8.796

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0750s0012.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.8	2e-05	57	79	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Kalax.0750s0012.1.p 57 FVCEICSKGFQRDQNLQLHRRGH 79 89*******************88 PP
2	zf-C2H2	13.2	0.00027	133	155	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H + + Kalax.0750s0012.1.p 133 WKCEKCSKKYAVQSDWKAHAKIC 155 58*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	5.5E-5	56	79	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.16E-6	56	79	No hit	No description
PROSITE profile	PS50157	10.887	57	79	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.036	57	79	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	59	79	IPR007087	Zinc finger, C2H2
SMART	SM00355	250	98	128	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	3.0E-4	121	154	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.16E-6	128	153	No hit	No description
SMART	SM00355	140	133	153	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 472 aa Download sequence Send to blast
MAASGASGGD ASVSSSGEQP AVKLAAVKKK RNLPGMPDPD AEVIALSPKT LMATNRFVCE 60 ICSKGFQRDQ NLQLHRRGHN LPWKLRQKTS KDVKKRVYVC PETSCVHHDP SRALGDLTGI 120 KKHFCRKHGE KKWKCEKCSK KYAVQSDWKA HAKICGTREY KCDCGTLFCR RDSFITHRAF 180 CDALAEESAK ATETQAPKLN RKSLHSTDDP KNQNAAANGS SQPAPTSDVL SEAADSGVRI 240 TEEEQPSEVA AGLTGSCNVS SNSSPSSAMF ASLLASSSTD LFRTVAHPHG HVAPDFAPQA 300 STEPVSLCLS NNQGLASSFG AAGQEHRQYA PLPQAAMSAT ALLQKAAQMG SSASSASLLR 360 GLGVTASSPS STRQQETFPW SRRQMEQEGR SIQAGLCLGL PPNGSPGFKD MMLGHSSMFS 420 PKQATLDLLG LGMAASGNPN GGISALLTSL GGNLDVDAPF RNGDIAEKDI R*

Sequence ? help Back to Top

Protein Sequence Length: 472 aa Download sequence Send to blast

MAASGASGGD ASVSSSGEQP AVKLAAVKKK RNLPGMPDPD AEVIALSPKT LMATNRFVCE  60
ICSKGFQRDQ NLQLHRRGHN LPWKLRQKTS KDVKKRVYVC PETSCVHHDP SRALGDLTGI  120
KKHFCRKHGE KKWKCEKCSK KYAVQSDWKA HAKICGTREY KCDCGTLFCR RDSFITHRAF  180
CDALAEESAK ATETQAPKLN RKSLHSTDDP KNQNAAANGS SQPAPTSDVL SEAADSGVRI  240
TEEEQPSEVA AGLTGSCNVS SNSSPSSAMF ASLLASSSTD LFRTVAHPHG HVAPDFAPQA  300
STEPVSLCLS NNQGLASSFG AAGQEHRQYA PLPQAAMSAT ALLQKAAQMG SSASSASLLR  360
GLGVTASSPS STRQQETFPW SRRQMEQEGR SIQAGLCLGL PPNGSPGFKD MMLGHSSMFS  420
PKQATLDLLG LGMAASGNPN GGISALLTSL GGNLDVDAPF RNGDIAEKDI R*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	1e-34	129	190	3	64	Zinc finger protein JACKDAW
5b3h_F	1e-34	129	190	3	64	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269\|PubMed:21571950, ECO:0000269\|PubMed:25035403}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024457504.1	0.0	protein indeterminate-domain 2 isoform X2
Swissprot	Q9LVQ7	1e-156	IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBL	A0A1Q3BNB2	0.0	A0A1Q3BNB2_CEPFO; Zf-C2H2_jaz domain-containing protein
TrEMBL	A0A2K2AFV5	0.0	A0A2K2AFV5_POPTR; Uncharacterized protein
STRING	POPTR_0005s12710.1	0.0	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-105	indeterminate(ID)-domain 2

Link Out ? help Back to Top
Phytozome	Kalax.0750s0012.1.p

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]