PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0750s0015.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

HD-ZIP

Protein Properties

Length: 222aa MW: 25392.9 Da PI: 5.8213

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0750s0015.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	63.8	2.4e-20	76	127	5	56
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++t++q +Le +Fe+++++ +e++e++A++lgL+ rqV vWFqNrRa++k Kalax.0750s0015.1.p 76 RKLTDYQGAQLELYFESEPKLETERKEKIAAELGLEPRQVAVWFQNRRARWK 127 6899***********************************************9 PP
2	HD-ZIP_I/II	103	2.5e-33	75	165	3	93
HD-ZIP_I/II 3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 kr+l++ q ++LE Fe+e kLe+erK+++a eLgl+prqvavWFqnrRAR+k k+lE +++ L++++ +++++Le++v eLr +l Kalax.0750s0015.1.p 75 KRKLTDYQGAQLELYFESEPKLETERKEKIAAELGLEPRQVAVWFQNRRARWKCKKLEDEFANLRTSHHCALAQKAQLEAQVLELRGKLV 164 9*************************************************************************************9886 PP HD-ZIP_I/II 93 e 93 e Kalax.0750s0015.1.p 165 E 165 5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	16.05	69	129	IPR001356	Homeobox domain
SMART	SM00389	7.8E-17	72	133	IPR001356	Homeobox domain
SuperFamily	SSF46689	9.84E-17	74	129	IPR009057	Homeodomain-like
CDD	cd00086	6.16E-15	75	127	No hit	No description
Pfam	PF00046	1.3E-17	76	127	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.8E-18	77	133	IPR009057	Homeodomain-like
PRINTS	PR00031	6.7E-6	100	109	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	104	127	IPR017970	Homeobox, conserved site
PRINTS	PR00031	6.7E-6	109	125	IPR000047	Helix-turn-helix motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 222 aa Download sequence Send to blast
MMTSNMMMMP MNDDHNFPVQ GDDDQLMMFL SSQQQQCLFD PLLCPKTEDQ PSKVKKQRKR 60 KPKNRGGENG AGQGKRKLTD YQGAQLELYF ESEPKLETER KEKIAAELGL EPRQVAVWFQ 120 NRRARWKCKK LEDEFANLRT SHHCALAQKA QLEAQVLELR GKLVEAESEL QRLSASCESG 180 ISVENTSTPA SSQSMEGVQL LENGCVQVMD YYWMNNLYEM M*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	57	64	RKRKPKNR
2	58	76	KRKPKNRGGENGAGQGKRK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36740.1	2e-37	homeobox protein 40

Link Out ? help Back to Top
Phytozome	Kalax.0750s0015.1.p