PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0750s0016.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HD-ZIP
Protein Properties Length: 224aa    MW: 25105.5 Da    PI: 6.532
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0750s0016.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.71.1e-1978129556
                          SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          +++t++q  +Le +Fe++ ++ +e++e +A++lgL+ rqV vWFqNrRa++k
  Kalax.0750s0016.1.p  78 RKLTDYQAVQLELCFESEAKLETERKETIAAELGLEPRQVAVWFQNRRARWK 129
                          5899***********************************************9 PP
2HD-ZIP_I/II105.93e-3477166392
          HD-ZIP_I/II   3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                          kr+l++ q+ +LE +Fe+e kLe+erK+++a eLgl+prqvavWFqnrRAR+k k+lE +++ L+++++ + +++++Le++v+eL  +l 
  Kalax.0750s0016.1.p  77 KRKLTDYQAVQLELCFESEAKLETERKETIAAELGLEPRQVAVWFQNRRARWKCKKLEDEFANLRTSHQCVLAQKAQLEAQVSELSGRLV 166
                          9************************************************************************************98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003891.2E-1374135IPR001356Homeobox domain
SuperFamilySSF466891.84E-1677131IPR009057Homeodomain-like
PROSITE profilePS5007114.96577131IPR001356Homeobox domain
CDDcd000867.49E-1477129No hitNo description
PfamPF000465.5E-1778129IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.9E-1781129IPR009057Homeodomain-like
PRINTSPR000311.5E-5102111IPR000047Helix-turn-helix motif
PROSITE patternPS000270106129IPR017970Homeobox, conserved site
PRINTSPR000311.5E-5111127IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MMTSNMVTMP VNGGHNFPVQ GGDDQLMMFL SSQQQKCLFD PVTLGPKTED QPGKAVKKQR  60
KRKPKNRGGE NGAGYGKRKL TDYQAVQLEL CFESEAKLET ERKETIAAEL GLEPRQVAVW  120
FQNRRARWKC KKLEDEFANL RTSHQCVLAQ KAQLEAQVSE LSGRLVEAES ELQRLSARCE  180
SGISVENSST PGSSLSMEGV QLLENGYAQV MDDYWMSNLY EMM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15966RKRKPKNR
26078KRKPKNRGGENGAGYGKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021602292.18e-41homeobox-leucine zipper protein ATHB-40-like
TrEMBLA0A199UBK82e-39A0A199UBK8_MANES; Uncharacterized protein
STRINGcassava4.1_026937m3e-40(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18550.12e-38homeobox protein 21