PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0754s0018.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

NF-YB

Protein Properties

Length: 134aa MW: 14843.5 Da PI: 5.2784

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0754s0018.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	98.8	4.4e-31	33	96	2	65
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingd 65 +eqd++lPianv+rimk++lP nakisk+aket+qecvsefisfvt++asdkc++e + ++++ Kalax.0754s0018.1.p 33 KEQDHLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGDASDKCRKETYRDLESE 96 79******************************************************98877765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.1E-27	29	89	IPR009072	Histone-fold
SuperFamily	SSF47113	3.83E-20	33	88	IPR009072	Histone-fold
Pfam	PF00808	6.2E-19	39	90	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 134 aa Download sequence Send to blast
MADNTDSNVS ECSLKHTHEA ESSGTANREG ILKEQDHLLP IANVGRIMKQ ILPPNAKISK 60 EAKETMQECV SEFISFVTGD ASDKCRKETY RDLESERANQ NRVRNNEQKD IEPPRNNPVA 120 VSGTITSTIN FIL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	1e-24	32	88	1	57	Transcription factor HapC (Eurofung)
4g92_B	1e-24	32	88	1	57	Transcription factor HapC (Eurofung)
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023891930.1	4e-40	nuclear transcription factor Y subunit B-4-like
TrEMBL	I1L7X0	4e-38	I1L7X0_SOYBN; Uncharacterized protein
STRING	GLYMA10G02480.1	7e-39	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47810.1	6e-32	nuclear factor Y, subunit B5

Link Out ? help Back to Top
Phytozome	Kalax.0754s0018.1.p