PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0759s0011.2.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 531aa    MW: 58119.5 Da    PI: 8.118
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0759s0011.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH51.32.1e-16337383455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           hn  ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY+ksLq
  Kalax.0759s0011.2.p 337 VHNLSERRRRDRINEKMKALQELIPHS-----NKSDKASMLDEAIEYLKSLQ 383
                          6*************************7.....59*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.01E-20330400IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.6E-20331392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.942333382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.58E-17336387No hitNo description
PfamPF000107.9E-14337383IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-17339388IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0010161Biological Processred light signaling pathway
GO:0010244Biological Processresponse to low fluence blue light stimulus by blue low-fluence system
GO:0010600Biological Processregulation of auxin biosynthetic process
GO:0010928Biological Processregulation of auxin mediated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 531 aa     Download sequence    Send to blast
MNHCIPDWNF EDCLPAANQM KHIGPDHELM ELLWRNGQVV MHSQTHRKSG STAPNDPMAA  60
QKHDQSSFKG CESCWNPSNL IQDDETVSWL QYPLDDPLEK ESGSNLFIEL ADQVEANKHV  120
KQFENDNIYS KLNPFEANNG MPSVHQQPVV KHSAGPAMAT IPMAPRKIPM LSVPSSNPST  180
LNLTQHVNAG SSEVHFVAKR TDNIAHGGIR EGSTMTVGSS HCGSNLIANE VSRTSRNGVS  240
NKNISPTVFK NSSDRKNFPP KAKGQIDSPD PTMSSSSGGS GSSFMLSAGT TTNSHKRKAS  300
NIEDYECQSD VAELESASAK KQSQRSGSSR KTRAAEVHNL SERRRRDRIN EKMKALQELI  360
PHSNKSDKAS MLDEAIEYLK SLQLQLQMMW MSSGMQPMMY PAVQHYMSRM GIGMGPTMPS  420
MHNAMQLPRV PLLEQPMSGT TTPNQVNVCP TPVLTPLRYP NQLQNSTLAE QYARYLGFQQ  480
MQAASQPVNM FNFGGAQAFP SNHTIPLPGA GNAPPIAGAT MPDSLGGKLR *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1341346ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00606ChIP-seqTransfer from AT2G43010Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024184315.11e-161transcription factor PIF4-like
RefseqXP_024184316.11e-161transcription factor PIF4-like
RefseqXP_024184317.11e-161transcription factor PIF4-like
TrEMBLA0A2P6S0J71e-159A0A2P6S0J7_ROSCH; Putative transcription factor bHLH family
STRINGXP_004303901.11e-152(Fragaria vesca)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43010.28e-49phytochrome interacting factor 4