PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0765s0013.2.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB_related
Protein Properties Length: 313aa    MW: 34769.7 Da    PI: 4.6265
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0765s0013.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.81.8e-162166148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         rg+ +++E++l++++++ lG++ W++Ia+ ++ gRt++++k+rw+++l
  Kalax.0765s0013.2.p 21 RGNISPQEEDLIIKLHAALGNR-WSLIASQLP-GRTDNEIKNRWNSHL 66
                         7899******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.368115IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.1E-10228IPR009057Homeodomain-like
SuperFamilySSF466896.84E-20272IPR009057Homeodomain-like
PROSITE profilePS5129426.3071670IPR017930Myb domain
SMARTSM007172.6E-162068IPR001005SANT/Myb domain
PfamPF002493.6E-152166IPR001005SANT/Myb domain
CDDcd001671.12E-112566No hitNo description
Gene3DG3DSA:1.10.10.601.8E-222966IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MRCGKSCRLR WINYLRKDLK RGNISPQEED LIIKLHAALG NRWSLIASQL PGRTDNEIKN  60
RWNSHLSRSI TSWRRPVNDT LPQQILDNLA KLMAKPNPST KKQGSKKNGP ANKETRDKPV  120
TLEDDNNDKP QTPDVHKESL PTNSCSQQSL QSIFSLEDRY EAEEGEMDMD LGPVDDYGGV  180
LSLSDMVTPS DPSTMMHQPL SPNEILSPGA LLYPEFMNEL AGLSTGHAEM GSASSWLPNC  240
STSTMDNSTT QPSLSSPSSP FTIDHLLNIS SDWNWEDCVQ TPNDQDLIMN HEVGSFDNLS  300
WLWDDGGVFG AV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-1627040108B-MYB
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47460.18e-37myb domain protein 12