PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0766s0011.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 300aa    MW: 33234.6 Da    PI: 8.4861
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0766s0011.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.34.3e-11119171254
                          HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          ++ hn+ Er RR ++N +++ L +l+P++sk  +k+ s  ei  +A  YI +L
  Kalax.0766s0011.1.p 119 KQDHNAKERLRRMKLNASYSALSSLIPNNSKRLKKRWSAPEIINRALTYIPEL 171
                          688*************************88888888**************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.97E-12111183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-10116175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.00E-8116176No hitNo description
PROSITE profilePS5088812.722117171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.0E-8119171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-4123177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MPSAHNFGDN TSIFGLQECH DTDTCTHTQQ VDESPTATQV QKNGNAHTDA SEQANEMVIV  60
MVQNQGTTNG SRIIRPGVNN KGIRKLSTGS KDKMSMAVQD KLALEASAEG SLGAHRKTKQ  120
DHNAKERLRR MKLNASYSAL SSLIPNNSKR LKKRWSAPEI INRALTYIPE LKNEIARMTL  180
EKEKRMSIHE TNKKHNNQVT ANISLRVFEV DEGNFIIQIC VKSVEGDVLS GLLYEVEDEG  240
ASIKGASTVL MSNDRICCHL QVEMNATPTG TDFIAVLRDR LASWIPSKVS RRDLLLESY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71200.14e-29bHLH family protein