PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0767s0007.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 223aa    MW: 25209.5 Da    PI: 8.6689
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0767s0007.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding482.9e-1572119148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          +g+WT+ Ed++l+  ++ +G g+W++ ++  g+ R++k+c++rw +yl
  Kalax.0767s0007.1.p  72 KGAWTKAEDDRLIAHIQAHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 119
                          79******************************99************97 PP
2Myb_DNA-binding57.53.1e-18125169147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          rg++T +Edel+++++ +lG++ W++Ia +++ gRt++++k++w+++
  Kalax.0767s0007.1.p 125 RGNFTDDEDELIIKLHSLLGNK-WSLIAGRLP-GRTDNEIKNYWNTH 169
                          89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.6E-2363122IPR009057Homeodomain-like
PROSITE profilePS5129414.76767119IPR017930Myb domain
SuperFamilySSF466891.87E-2871166IPR009057Homeodomain-like
SMARTSM007176.2E-1271121IPR001005SANT/Myb domain
PfamPF002491.6E-1372119IPR001005SANT/Myb domain
CDDcd001671.95E-974119No hitNo description
PROSITE profilePS5129428.245120174IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.6E-27123174IPR009057Homeodomain-like
SMARTSM007178.7E-17124172IPR001005SANT/Myb domain
PfamPF002492.9E-16125169IPR001005SANT/Myb domain
CDDcd001671.13E-12127170No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MKRAGADASN HLHPLLSSFH LHYPPNYNCY VAYINSVQII DKALTGSYTQ VVKRGETDMG  60
RSPCCEKAHT NKGAWTKAED DRLIAHIQAH GEGCWRSLPK AAGLLRCGKS CRLRWINYLR  120
PDLKRGNFTD DEDELIIKLH SLLGNKWSLI AGRLPGRTDN EIKNYWNTHI RKKLLSRGVD  180
PINHQSTQES SDHRKTMRGN TRDPEDAEDT DLNLDLQISP PC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-297117426128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019243289.14e-91PREDICTED: myb-related protein 308-like
SwissprotP813935e-90MYB08_ANTMA; Myb-related protein 308
TrEMBLA0A1J6IJV61e-89A0A1J6IJV6_NICAT; Transcription repressor myb4
STRINGXP_010265977.15e-89(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.19e-89myb domain protein 4
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]