PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0781s0015.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family CPP
Protein Properties Length: 633aa    MW: 69234 Da    PI: 8.5815
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0781s0015.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR44.62.8e-14132171242
                  TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                          ++k+CnCk+skClk+YCeCfaag++C+  C+C++C N+ e+
  Kalax.0781s0015.1.p 132 KQKQCNCKNSKCLKLYCECFAAGVHCDG-CNCTNCYNNIEH 171
                          89**************************.********9775 PP
2TCR47.24.4e-15216255140
                  TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                          k++kgC+Ckks ClkkYCeCf+ +  Cse+C+C dCkN+e
  Kalax.0781s0015.1.p 216 KHNKGCHCKKSGCLKKYCECFQGNIPCSENCRCVDCKNCE 255
                          589***********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011143.5E-15131171IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.044132256IPR005172CRC domain
PfamPF036383.8E-11133168IPR005172CRC domain
SMARTSM011147.7E-18216257IPR033467Tesmin/TSO1-like CXC domain
PfamPF036385.4E-11219254IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 633 aa     Download sequence    Send to blast
MDQVDAESRA VAVDSSSRTK LARQLDFTPM YNKVAAANVV LPNHPQARLQ LKIEAQVKPK  60
PQPQPQLQPP PAVQGVRPIV RPELQTRPQS VPVVQRALLH PVPRPPYPIA QFESAQAQPN  120
IKVEVKDVTP KKQKQCNCKN SKCLKLYCEC FAAGVHCDGC NCTNCYNNIE HESVRQEAVT  180
AALDRNPNAF RPKIANSPHK PRNGRVEPGE SELAAKHNKG CHCKKSGCLK KYCECFQGNI  240
PCSENCRCVD CKNCEGSEER RSLCYGDNMA PTIYYQQQTT TANAVVKEAV GPYGYKITQV  300
SRKRKNPEQT TVHFHPIQPI GQFQQRADHV AEQHKLDNDL KPSALSSPVN ALSLGSSKIT  360
VSSLMADILR PQNIRELCSH LVGASAEVLK SHTENIVKPL NQMEVTRADH KVTISTQTSN  420
ANAGDGNVET SVNTGNFISN QANGECTSDI GSTGDEFLNE RPISPGTLAL MCDENDAAFT  480
LGSENGVPGH DTASTTNSEL HAKQEKVVLT RFRDFLNHLI VCLSVKESTL INEKEQAQQV  540
RAVNSIKTSN NRTQLPISNH NSSSSNGRPP LPLPTTNYSL GMIRPLVHTS NHITKNGITR  600
PQLTNSATNS SSRQSSVGLP THSAVRSQEE SK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A2e-331242652132Protein lin-54 homolog
5fd3_B2e-331242652132Protein lin-54 homolog
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028115699.11e-138protein tesmin/TSO1-like CXC 5 isoform X1
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.12e-96Tesmin/TSO1-like CXC domain-containing protein