PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0786s0001.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

CPP

Protein Properties

Length: 518aa MW: 56698.5 Da PI: 7.8274

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0786s0001.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	22	3.4e-07	1	25	17	42
TCR 17 YCeCfaagkkCseeCkCedCkNkeek 42 YCeCfaag++C+ C+C++C+N+ e+ Kalax.0786s0001.1.p 1 YCECFAAGVHCDG-CNCTNCHNNIEH 25 ***********.******9775 PP
2	TCR	47.6	3.4e-15	70	109	1	40
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 k++kgC+Ckks ClkkYCeCf+ + Cse+C+C dCkN+e Kalax.0786s0001.1.p 70 KHNKGCHCKKSGCLKKYCECFQGNIPCSENCRCVDCKNCE 109 589***********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	0.0089	1	25	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	32.228	1	110	IPR005172	CRC domain
Pfam	PF03638	1.1E-4	1	22	IPR005172	CRC domain
SMART	SM01114	7.7E-18	70	111	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	4.2E-11	73	108	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 518 aa Download sequence Send to blast
YCECFAAGVH CDGCNCTNCH NNIEHESARQ EAVTAALERN PNAFRPKIAN SPHKLPNGKV 60 ETEESAIAAK HNKGCHCKKS GCLKKYCECF QGNIPCSENC RCVDCKNCEG SEDRKSLCYG 120 DNMTPTVYYQ QQSTNAVVRE TLGPYSYKIT QVSRKRKNPE ETTVHCHPLQ PKAECVAEQQ 180 NPDNDLKLSV LSLPANSVSM GSSNITFSSL MADILPPQNV KELCSHLVGA SAEVLKAHTE 240 NIGKSNNQME VAQVDHKAPI STQPSHVNAR DGNVKTSVNT DNSSCNQAKG DCESDIGSTP 300 DKFQNERRPM SPGTIALMCD ENDSTFMLES ENGVQGHETA STTNSDLHAK QEKVVLTRFR 360 DFLNHLIVRL SVKESMCIND NMQIQHVRAP NCIKNSNNCI SRPQIPISNH SSSNDFIRPQ 420 LPATTHNGTN GIIRPQLPAT THNGTNGMVR PQLLTSNGSI RPQLLISNHC GSNGMIRPPI 480 GNYNTKNGVI RPQLTNSNSS APIHNRLRSQ DTKEATK*

Sequence ? help Back to Top

Protein Sequence Length: 518 aa Download sequence Send to blast

YCECFAAGVH CDGCNCTNCH NNIEHESARQ EAVTAALERN PNAFRPKIAN SPHKLPNGKV  60
ETEESAIAAK HNKGCHCKKS GCLKKYCECF QGNIPCSENC RCVDCKNCEG SEDRKSLCYG  120
DNMTPTVYYQ QQSTNAVVRE TLGPYSYKIT QVSRKRKNPE ETTVHCHPLQ PKAECVAEQQ  180
NPDNDLKLSV LSLPANSVSM GSSNITFSSL MADILPPQNV KELCSHLVGA SAEVLKAHTE  240
NIGKSNNQME VAQVDHKAPI STQPSHVNAR DGNVKTSVNT DNSSCNQAKG DCESDIGSTP  300
DKFQNERRPM SPGTIALMCD ENDSTFMLES ENGVQGHETA STTNSDLHAK QEKVVLTRFR  360
DFLNHLIVRL SVKESMCIND NMQIQHVRAP NCIKNSNNCI SRPQIPISNH SSSNDFIRPQ  420
LPATTHNGTN GIIRPQLPAT THNGTNGMVR PQLLTSNGSI RPQLLISNHC GSNGMIRPPI  480
GNYNTKNGVI RPQLTNSNSS APIHNRLRSQ DTKEATK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	3e-22	1	117	25	130	Protein lin-54 homolog
5fd3_B	3e-22	1	117	25	130	Protein lin-54 homolog

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29000.1	2e-86	Tesmin/TSO1-like CXC domain-containing protein

Link Out ? help Back to Top
Phytozome	Kalax.0786s0001.1.p