PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0801s0010.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 344aa    MW: 37839.6 Da    PI: 8.3437
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0801s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.36.7e-09177224455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55 
                          +h+ +Er RR+ri +++  L+ l+P +     +K   Ka +L + ++Y++sLq
  Kalax.0801s0010.1.p 177 SHSLAERVRRERISERMKMLQALVPGC-----EKvTGKALMLDEIINYVQSLQ 224
                          8*************************9.....67699***************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.36E-16171239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.11E-10171228No hitNo description
PROSITE profilePS5088815.383173223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-15173236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.8E-6177224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-9179229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MAAHSYQPHH FLLSSTFFPS TPFDMSGFVN EGNISSKDSN SAIIAFANDM AASSPMRQVL  60
HEGLSDAGVI HSSKTMHSAV SSIDVEKAEV IGEQVTQNKH MRCSDHKEKK KKTRRGSSLN  120
NSTQGKAKKQ KKSEDGQNVV EEPKPNKVSK KSQMDGSEDT QKDYIHVRAR RGQATDSHSL  180
AERVRRERIS ERMKMLQALV PGCEKVTGKA LMLDEIINYV QSLQNQIEFL SMKLASFNPI  240
YSNFAMDLDA ALLRQERLSR LLAAASQPGG SAQQYSPTAV NYNNSSTTTL SGPAVGCHHH  300
SLIETSLLLQ QEAADSLSWD QMDTQTQNLM NQFGLLGNAM CSF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021286178.16e-85transcription factor bHLH137
RefseqXP_021286179.16e-85transcription factor bHLH137
STRINGEOY226035e-76(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.23e-52bHLH family protein