PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0807s0001.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HD-ZIP
Protein Properties Length: 748aa    MW: 81788.2 Da    PI: 5.7877
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0807s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.48e-2159114156
                          TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          r+k +++t++q++eLe++++++++p++++r eL+++l+L++rqVk+WFqNrR+++k
  Kalax.0807s0001.1.p  59 RKKYHRHTPQQIQELEAFYKECPHPDEKQRLELSRRLNLETRQVKFWFQNRRTQMK 114
                          7999*************************************************999 PP
2START174.56.7e-552564802205
                          HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....E CS
                START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....k 78 
                          la +a++el+k+a+++  +W++ss    e +n +e+l +f+++ +     +  +a+r++g+v  ++  lve+++d + qW   ++    +
  Kalax.0807s0001.1.p 256 LAVTAMDELMKMAAVNTSLWSSSSdgvkEVLNFEEYLATFPPTIGpkpnnFVLDASRDTGLVCLNSLALVETFMDLN-QWVSVFPslvaR 344
                          7899***********************999************999********************************.************ PP

                          EEEEEEECTT......EEEE.EEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--..-TTSEE-EESSEEEEEEEECT CS
                START  79 aetlevissg......galq.lmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.sssvvRaellpSgiliepksn 159
                          a+t+ vis+g      g+lq +m+aelq+lsplvp R + f+R+++++++g+w++vd S+d   + +   s++  +++lpSg++i+++++
  Kalax.0807s0001.1.p 345 ASTTTVISPGldgswnGTLQlQMQAELQVLSPLVPlRQVKFLRFCKKHEEGKWAVVDLSIDAVHEGSVaLSPFSLCRRLPSGCVIQEMPD 434
                          ****************77773689*******************************************9*9******************** PP

                          CEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
                START 160 ghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqce 205
                          g skvtw+eh+ ++++++h l+r+l++sg+ +gak+w+a lqr+ce
  Kalax.0807s0001.1.p 435 GFSKVTWIEHTQYDENVVHPLYRRLLGSGMGFGAKRWLASLQRHCE 480
                          *********************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.13E-2048116IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.1E-2149116IPR009057Homeodomain-like
PROSITE profilePS5007117.49156116IPR001356Homeobox domain
SMARTSM003892.8E-1958120IPR001356Homeobox domain
PfamPF000461.7E-1859114IPR001356Homeobox domain
CDDcd000866.19E-2059116No hitNo description
PROSITE patternPS00027091114IPR017970Homeobox, conserved site
PROSITE profilePS5084841.021246484IPR002913START domain
SuperFamilySSF559613.21E-25247482No hitNo description
CDDcd088751.09E-107250480No hitNo description
SMARTSM002347.9E-37255481IPR002913START domain
PfamPF018521.0E-47256480IPR002913START domain
SuperFamilySSF559613.02E-17512717No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 748 aa     Download sequence    Send to blast
MEGGGAEGGL IGAGELVDQH LVPGVLDGFD ESRSGSENLD AASGDDQSIM RGEGRAPKRK  60
KYHRHTPQQI QELEAFYKEC PHPDEKQRLE LSRRLNLETR QVKFWFQNRR TQMKTQIERH  120
ENMLLKKEND KLRFEQAAMK NALRNPLCTS CGGPVVSPEL PFDEQTLKSE NARLRDELTR  180
ICLLTEKFLG RPISSIASSL TQRSATSTLD FSVGNIGFQG LNSMDHALSS GLDMSLLGSA  240
VSLPEAPVDK SFIVQLAVTA MDELMKMAAV NTSLWSSSSD GVKEVLNFEE YLATFPPTIG  300
PKPNNFVLDA SRDTGLVCLN SLALVETFMD LNQWVSVFPS LVARASTTTV ISPGLDGSWN  360
GTLQLQMQAE LQVLSPLVPL RQVKFLRFCK KHEEGKWAVV DLSIDAVHEG SVALSPFSLC  420
RRLPSGCVIQ EMPDGFSKVT WIEHTQYDEN VVHPLYRRLL GSGMGFGAKR WLASLQRHCE  480
GLAALMASGE PVENPSGMTA SGRKSMFKLA RRMSDNFCSG VCASLMSKWE RLYPGNVGEE  540
SVQLMSRKTV DSPGEPSGIV LSATASVWMP VARQRLFDFL RDKRYRSDWD ILSNGGPIQE  600
VVRISKGPDP GNCVSLLRCD TASPSQEMLI LQETWTDAAS SLIVYAPVDT PAIQSVLGGG  660
DSTYVALLPS GFALYPDPDP AQPGNPAAGC LLTAGFQILV NELPTAKLTV DSVTTVEHLI  720
HCTIEKIHQA LDCAAPASRS QNPVPHE*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010661562.10.0PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2 isoform X2
SwissprotQ9M2E80.0HDG1_ARATH; Homeobox-leucine zipper protein HDG1
TrEMBLA5BH090.0A5BH09_VITVI; Uncharacterized protein
TrEMBLF6I3160.0F6I316_VITVI; Uncharacterized protein
STRINGVIT_15s0048g02000.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61150.10.0homeodomain GLABROUS 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Horstman A, et al.
    AIL and HDG proteins act antagonistically to control cell proliferation.
    Development, 2015. 142(3): p. 454-64
    [PMID:25564655]