PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0807s0002.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HSF
Protein Properties Length: 358aa    MW: 38820.6 Da    PI: 6.5962
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0807s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1149.9e-36371272101
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl+k+y++++d +++++isw+e+g++fvv+++ efa++vLpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF+++ F++g+k
  Kalax.0807s0002.1.p  37 FLTKTYQLVDDISIDSIISWNEDGTAFVVWNPAEFARDVLPKYFKHNNFSSFVRQLNTYGFRKVMPDR---------WEFSNDCFRRGDK 117
                          9*****************************************************************99.........************* PP

                          XXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkk 101
                          +ll++i r+k
  Kalax.0807s0002.1.p 118 RLLCDIVRRK 127
                          *******997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.106.4E-3833121IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.5E-5733126IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.38E-3434126IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.0E-3237126IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.9E-203760IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.9E-207587IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434076100IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.9E-2088100IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MAHQPPPLPL GEQIVAVDLP PPPPTVPDAQ RFIPTPFLTK TYQLVDDISI DSIISWNEDG  60
TAFVVWNPAE FARDVLPKYF KHNNFSSFVR QLNTYGFRKV MPDRWEFSND CFRRGDKRLL  120
CDIVRRKLMS GVSGSSSALT VSAQPVLMDP STSQSGEGQV FSSNSTPTSA APMATVFLDH  180
QNNSGNNIGS SSSNNCGTAA RAHLIDENDR LKKENTQLWK ELSQMKSMCT NIYSMMSNYN  240
PGSGPVPGLG HGQGPPMHAA ARCGSSNNSS QAESVMNPAM NPVAIDLMSS RRLLAAVAEI  300
QAATPAAQPA AEENLCMHSR LFGFQLGSKR ARGDGSSDPM DHEDLLQLQQ PGPSFNH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-243712629129Heat shock factor protein 1
5d5v_B1e-243712629129Heat shock factor protein 1
5d5v_D1e-243712629129Heat shock factor protein 1
5hdg_A8e-253712610110Heat shock factor protein 1
5hdn_A8e-253712610110Heat shock factor protein 1
5hdn_B8e-253712610110Heat shock factor protein 1
5hdn_C8e-253712610110Heat shock factor protein 1
5hdn_D8e-253712610110Heat shock factor protein 1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11660.12e-62HSF family protein