PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0807s0016.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB_related
Protein Properties Length: 441aa    MW: 48068.4 Da    PI: 9.2589
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0807s0016.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding391.9e-12182226147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          r++WT+ E++++++a +++  + Wk+I + +g  +t  q++s+ qky
  Kalax.0807s0016.1.p 182 RQSWTEPEHDKFLEALQLFDRD-WKKIEAFIG-SKTVIQIRSHAQKY 226
                          899*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.05E-15176232IPR009057Homeodomain-like
PROSITE profilePS5129414.023177231IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.3E-6180232IPR009057Homeodomain-like
TIGRFAMsTIGR015579.5E-18180229IPR006447Myb domain, plants
SMARTSM007179.9E-10181229IPR001005SANT/Myb domain
PfamPF002494.1E-10182226IPR001005SANT/Myb domain
CDDcd001672.47E-7184227No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MGTGCTMMLL RGSPECNINP RFEPVNLLWL PLIWWMAVGL DEEIVSYNAC RPERIESFKA  60
KALNLNHTTQ NAVFRVLNRH THPFTANPRV TLSFVTPNSN KSERYCESTN PSRASPIPIA  120
TSNSTRCSNP PDAFYLDPTG AALPGLSPFA PTGGGGAIGV ASAAGEDGDK KVRKPYTITK  180
SRQSWTEPEH DKFLEALQLF DRDWKKIEAF IGSKTVIQIR SHAQKYFLKV QKSGGNEHLP  240
PPRPKRKAAH PYPHKASKSV PALPELRGAL LSSASASSLP HPGYVLKHDV HSIPSDPSSR  300
AAVASSWTDS SAQASAIPNA SQGDLKSTAE AVAINSNNSA ESNLRQSVSR TPVQANKSQA  360
IRVLPDFAQV YGFIGSVFDP NVSGHLQNLK QMDPIDVETV LLLMRNLSIN LTSPAFEDHR  420
KILSTYEFDP KEPSYDVIGI *
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002273319.21e-124PREDICTED: protein REVEILLE 6
SwissprotQ8H0W31e-101RVE6_ARATH; Protein REVEILLE 6
TrEMBLF6H6C01e-122F6H6C0_VITVI; Uncharacterized protein
STRINGVIT_16s0050g01180.t011e-123(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.21e-85MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]