PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0810s0018.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

MYB_related

Protein Properties

Length: 253aa MW: 27507.4 Da PI: 9.7331

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0810s0018.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	43.8	5.7e-14	102	145	4	47
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 WT++E+ +++ + ++lG+g+W+ I++++ Rt+ q+ s+ qky Kalax.0810s0018.1.p 102 WTEDEHRKFLAGLEKLGKGDWRGISKHFVPSRTPTQVASHAQKY 145 ***************************9***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.0E-12	94	149	IPR009057	Homeodomain-like
PROSITE profile	PS51294	18.686	94	150	IPR017930	Myb domain
SuperFamily	SSF46689	2.69E-18	95	151	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.2E-17	97	149	IPR006447	Myb domain, plants
SMART	SM00717	5.1E-11	98	148	IPR001005	SANT/Myb domain
Pfam	PF00249	1.3E-11	102	145	IPR001005	SANT/Myb domain
CDD	cd00167	3.01E-11	102	146	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence Send to blast
MAKACSYCGS MGHNSRTCVT YNKNTLVAPR LKLFGVQLDA PIASSSTMKK SCSVGCFSPS 60 ASLSSCTLPN ASLPRNSSIL PTGYLSDDHN GHPKTRKKGV LWTEDEHRKF LAGLEKLGKG 120 DWRGISKHFV PSRTPTQVAS HAQKYFLRQH NLSKKRKGPS LCSPQTEDFS KTVWLKYASS 180 YYSEAFCGRS SYLPSPMTNL LVANWLYNSS GLSTYPKCKH LSKPATVEAE PNLDLTIAAP 240 PQSESTCGCL GT*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription repressor that binds to 5'-TATCCA-3' elements in gene promoters. Contributes to the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Transcription repressor involved in a cold stress response pathway that confers cold tolerance. Suppresses the DREB1-dependent signaling pathway under prolonged cold stress. DREB1 responds quickly and transiently while MYBS3 responds slowly to cold stress. They may act sequentially and complementarily for adaptation to short- and long-term cold stress (PubMed:20130099). {ECO:0000269\|PubMed:12172034, ECO:0000269\|PubMed:20130099}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by sucrose and gibberellic acid (GA) (PubMed:12172034). Induced by cold stress in roots and shoots. Induced by salt stress in shoots. Down-regulated by abscisic aci (ABA) in shoots (PubMed:20130099). {ECO:0000269\|PubMed:12172034, ECO:0000269\|PubMed:20130099}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018845997.1	8e-54	PREDICTED: myb-like protein J
Swissprot	Q7XC57	1e-40	MYBS3_ORYSJ; Transcription factor MYBS3
TrEMBL	A0A2I4GQ25	2e-52	A0A2I4GQ25_JUGRE; myb-like protein J
STRING	EOY30492	9e-49	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56840.1	1e-39	MYB_related family protein

Link Out ? help Back to Top
Phytozome	Kalax.0810s0018.1.p

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992] Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Su CF, et al. A novel MYBS3-dependent pathway confers cold tolerance in rice. Plant Physiol., 2010. 153(1): p. 145-58 [PMID:20130099]