PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0812s0008.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

C3H

Protein Properties

Length: 426aa MW: 46635.5 Da PI: 6.6736

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0812s0008.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18	5e-06	378	400	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C +f C +G++C++ H+ Kalax.0812s0008.1.p 378 KPCIYFNTARGCIHGANCSYQHD 400 69********************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	11.554	374	402	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 426 aa Download sequence Send to blast
MRGSKTRRVS WATDANLCQV RLFLIDEAPS QVGLGIQDYL QAKTSSHLYS TSFEDNLPPG 60 FERVQPTNLS NNLLLEVPTI KWKCPPKLIV DLTWHVAAGE ESQEVEAENH RGLRVLEAIY 120 PRPSSIPPNA VVSVDVKESQ NDYQQPPLIP ITPIEEEDVV VDLPYDPMQS KQIGSQGEVA 180 ASGGFSTPVY VGNNSASTSS SDRLFSVAAP GLEPGVLAAA SATYAAIMKT NQQGNLIDQD 240 LLVQILSDRN LAEKLVNGYR ASNLEAPQHN LPPANLANPP SAQNSRPELS KPAVPVSSSN 300 APLYLQPNKV LHPTVQGPPP VPVPPAKDIN YYKCLIQKHG EDRQEVPQQF GSRPNSQYAM 360 NQDHQRNNPH ASKPKIMKPC IYFNTARGCI HGANCSYQHD TSFQQRVNSM PDAKRMKMDR 420 EITGA*

Sequence ? help Back to Top

Protein Sequence Length: 426 aa Download sequence Send to blast

MRGSKTRRVS WATDANLCQV RLFLIDEAPS QVGLGIQDYL QAKTSSHLYS TSFEDNLPPG  60
FERVQPTNLS NNLLLEVPTI KWKCPPKLIV DLTWHVAAGE ESQEVEAENH RGLRVLEAIY  120
PRPSSIPPNA VVSVDVKESQ NDYQQPPLIP ITPIEEEDVV VDLPYDPMQS KQIGSQGEVA  180
ASGGFSTPVY VGNNSASTSS SDRLFSVAAP GLEPGVLAAA SATYAAIMKT NQQGNLIDQD  240
LLVQILSDRN LAEKLVNGYR ASNLEAPQHN LPPANLANPP SAQNSRPELS KPAVPVSSSN  300
APLYLQPNKV LHPTVQGPPP VPVPPAKDIN YYKCLIQKHG EDRQEVPQQF GSRPNSQYAM  360
NQDHQRNNPH ASKPKIMKPC IYFNTARGCI HGANCSYQHD TSFQQRVNSM PDAKRMKMDR  420
EITGA*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006435141.1	1e-126	zinc finger CCCH domain-containing protein 6
TrEMBL	A0A067GYY2	1e-125	A0A067GYY2_CITSI; Uncharacterized protein
TrEMBL	V4TFC9	1e-125	V4TFC9_9ROSI; Uncharacterized protein
STRING	XP_006473619.1	1e-125	(Citrus sinensis)

Link Out ? help Back to Top
Phytozome	Kalax.0812s0008.1.p