PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0814s0001.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

M-type_MADS

Protein Properties

Length: 119aa MW: 13581.6 Da PI: 7.9811

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0814s0001.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	30.1	6.3e-10	5	39	8	42
HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 8 nrqvtfskRrngilKKAeELSvLCdaevaviifss 42 r+ tf kRr+ ++ KA +S+L++ e++ +++s+ Kalax.0814s0001.1.p 5 LRKATFRKRRECLMRKATQISTLTGEEACGVVLSP 39 6999*************************999996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55455	3.27E-13	4	78	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.4E-9	5	39	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	9.292	6	38	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 119 aa Download sequence Send to blast
MHPQLRKATF RKRRECLMRK ATQISTLTGE EACGVVLSPP VYWPPSINGV LDRFLSLHEA 60 DQCKKMTTPD SFMQEKIAKM EEEVNKEHRK ATDQEINYVT HSIYSHGKPI DCLTFGET*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G05860.2	7e-15	M-type_MADS family protein

Link Out ? help Back to Top
Phytozome	Kalax.0814s0001.1.p