PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0822s0014.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 159aa    MW: 17225.2 Da    PI: 10.0535
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0822s0014.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.45.6e-163078355
                  AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         y GVr +k +g+WvAeIr+p++   r r++lg++ ta  Aa+a++ a   l+g
  Kalax.0822s0014.1.p 30 YNGVRMRK-WGKWVAEIREPKK---RSRIWLGTYKTAVAAARAHDVALFHLRG 78
                         78***999.**********965...5**********************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103221.9312986IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-292987IPR001471AP2/ERF domain
SMARTSM003803.8E-342992IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-203087IPR016177DNA-binding domain
PRINTSPR003675.5E-93041IPR001471AP2/ERF domain
CDDcd000181.60E-243088No hitNo description
PfamPF008474.8E-103078IPR001471AP2/ERF domain
PRINTSPR003675.5E-95268IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MEEKQSDGGG GSSHSQSRAV FGSGRGGREY NGVRMRKWGK WVAEIREPKK RSRIWLGTYK  60
TAVAAARAHD VALFHLRGRS EKLNFPEDFV GRVSVEMSAE EIRRMATAVG AEVDAAELGR  120
RRRRDVNEPP RCGGAEGGDE EGGGCGGSGR PDLNRLPD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-152786363ATERF1
3gcc_A6e-152786363ATERF1
5wx9_A1e-1429891475Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001268123.11e-39drought responsive element binding protein
SwissprotQ9SNE11e-33ERF11_ARATH; Ethylene-responsive transcription factor ERF011
TrEMBLA0A438KQR43e-38A0A438KQR4_VITVI; Ethylene-responsive transcription factor ERF008
TrEMBLA5BZA74e-38A5BZA7_VITVI; Uncharacterized protein
TrEMBLA6XA903e-38A6XA90_VITVI; Drought responsive element binding protein
STRINGVIT_07s0031g00190.t015e-39(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23340.16e-29DREB and EAR motif protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Shen PC,Hour AL,Liu LD
    Microarray meta-analysis to explore abiotic stress-specific gene expression patterns in Arabidopsis.
    Bot Stud, 2017. 58(1): p. 22
    [PMID:28510204]