PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0827s0005.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family M-type_MADS
Protein Properties Length: 194aa    MW: 20724.1 Da    PI: 5.6488
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0827s0005.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF382.1e-121253243
                         ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
               SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                         +i + s+r vt++kRr+g++KK   L+ L++  +a i+fs+ 
  Kalax.0827s0005.1.p 12 PIHDISRRRVTLTKRRQGLFKKMDKLCKLTGFTAAAIVFSTA 53
                         68999***********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.5E-11362IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.974363IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.24E-14464IPR002100Transcription factor, MADS-box
CDDcd001201.30E-16460No hitNo description
PRINTSPR004048.0E-9525IPR002100Transcription factor, MADS-box
PfamPF003191.2E-131359IPR002100Transcription factor, MADS-box
PRINTSPR004048.0E-92540IPR002100Transcription factor, MADS-box
PRINTSPR004048.0E-94061IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MGTGRKRIEI QPIHDISRRR VTLTKRRQGL FKKMDKLCKL TGFTAAAIVF STACRPYSFG  60
DLSLFDAFTG SEGQGREDGG GYHLGGSRLG LGRVSEPEGV DGFTGSGVEG GPSTSYSQEV  120
GGGDGDRSFQ LGFGESEGVN DLDGLMEELS SLLEMRSKVF DRLNRHAEGF GGDFLPPQPL  180
SIIEVDAPPS PHH*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72350.17e-12M-type_MADS family protein