PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0831s0003.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family WOX
Protein Properties Length: 253aa    MW: 27751.1 Da    PI: 8.4601
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0831s0003.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.91.1e-201474257
                         T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
             Homeobox  2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                         ++R+++tkeql  Le+l+e+  r+psae+++ ++k+l    +++ ++V++WFqN++a++++
  Kalax.0831s0003.1.p 14 SSRWNPTKEQLSLLESLYEQgIRTPSAEQIQSITKRLqaygHIEGKNVFYWFQNHKARQRQ 74
                         58*****************99**************************************97 PP
2Wus_type_Homeobox1153.7e-371476365
    Wus_type_Homeobox  3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                         ++RW+Pt+eQ+ +Le+ly++G+rtP++e+iq it++L++yG+ie+kNVfyWFQN+kaR+rqkq
  Kalax.0831s0003.1.p 14 SSRWNPTKEQLSLLESLYEQGIRTPSAEQIQSITKRLQAYGHIEGKNVFYWFQNHKARQRQKQ 76
                         79***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.84E-14782IPR009057Homeodomain-like
PROSITE profilePS5007111.3531075IPR001356Homeobox domain
SMARTSM003893.3E-71279IPR001356Homeobox domain
CDDcd000868.21E-71371No hitNo description
Gene3DG3DSA:1.10.10.604.5E-91483IPR009057Homeodomain-like
PfamPF000462.5E-181574IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009942Biological Processlongitudinal axis specification
GO:0010654Biological Processapical cell fate commitment
GO:0048825Biological Processcotyledon development
GO:0080167Biological Processresponse to karrikin
GO:0090451Biological Processcotyledon boundary formation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MDPSNAGSSS TGPSSRWNPT KEQLSLLESL YEQGIRTPSA EQIQSITKRL QAYGHIEGKN  60
VFYWFQNHKA RQRQKQKMDQ QQMMICGAVS SNNAHNNVVA ASNLNNVDNN AAADGAYFNR  120
FYYHSPPPIS PSGVAAVAGC ALPLLPGPHS VAYSPYHIAR PEFGFYPHCP KIVLPNHIPP  180
SINTPMSPHP RHEFHRNLSS LVSQHNAAIA EVNNGSVAYP SSAFEQATAL TMTTTTLDLF  240
PVYPTGILQQ RDA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59340.12e-21WUSCHEL related homeobox 2