PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0854s0009.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

G2-like

Protein Properties

Length: 261aa MW: 29166.8 Da PI: 7.1657

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0854s0009.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	104.3	7.5e-33	10	64	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+WtpeLH+rFvea+++LGG++kAtPk++++lmk++gLtl+h+kSHLQk+Rl Kalax.0854s0009.1.p 10 KPRLKWTPELHSRFVEAIAKLGGPDKATPKSVMKLMKIPGLTLYHLKSHLQKFRL 64 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.449	7	67	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	4.1E-30	8	67	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.97E-16	9	65	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.8E-23	10	65	IPR006447	Myb domain, plants
Pfam	PF00249	1.6E-8	12	62	IPR001005	SANT/Myb domain
Pfam	PF14379	1.2E-20	103	148	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 261 aa Download sequence Send to blast
MGLILSTDAK PRLKWTPELH SRFVEAIAKL GGPDKATPKS VMKLMKIPGL TLYHLKSHLQ 60 KFRLGKSQLS ETCPDSRPED RGQIHFDQDD HGASLKQINE NFKIAQALQL QMEVQTQLHT 120 QIEVQRRLQL RIEAQGKYLQ SVLKKAQESL AGYKNTSQCE LSELVSMVNS SCQNSSALSD 180 LTETESCRLR DLAKGLARCA RSSDASPTSS SSPAQEQQDS LNHQLNTLNS EYEDQQTAKR 240 PRLSLQLSLD LNSEYEDQSD *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	7e-21	9	66	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	7e-21	9	66	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	7e-21	9	66	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	7e-21	9	66	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	7e-21	9	66	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	7e-21	9	66	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	7e-21	9	66	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	7e-21	9	66	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021890537.1	2e-85	myb family transcription factor PHL8-like isoform X3
Swissprot	F4I274	1e-62	PHL8_ARATH; Myb family transcription factor PHL8
TrEMBL	A0A2I4DJV4	7e-82	A0A2I4DJV4_JUGRE; myb family transcription factor PHL8-like
STRING	XP_010108678.1	1e-81	(Morus notabilis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69580.1	1e-64	G2-like family protein

Link Out ? help Back to Top
Phytozome	Kalax.0854s0009.1.p

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]