PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0854s0011.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

M-type_MADS

Protein Properties

Length: 389aa MW: 43057.3 Da PI: 6.0904

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0854s0011.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	67.6	1.2e-21	9	53	1	45
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 kr en+ rq+t++kR+ngilKKA+EL +LCd+++++++fs+tgk Kalax.0854s0011.1.p 9 KRLENSNSRQTTYAKRKNGILKKANELAILCDIDILLLMFSPTGK 53 689****************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.3E-30	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	24.292	1	53	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	9.94E-26	2	94	IPR002100	Transcription factor, MADS-box
CDD	cd00266	3.80E-26	2	81	No hit	No description
PRINTS	PR00404	1.5E-17	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.9E-19	11	54	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.5E-17	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.5E-17	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 389 aa Download sequence Send to blast
MGRVKLKIKR LENSNSRQTT YAKRKNGILK KANELAILCD IDILLLMFSP TGKPSLCCGK 60 RGVEEVIAKF AQLTPQERAK RQLEGLEALK KTFKKLDHDV NIQEFLGAST QTVEGMTEQM 120 VQIRAELEET QQRLSYWSDP SKIESLDHLG QMEDSLGKSL DAIRAHKENL EKQQLILQET 180 TAQIQNEMQM PYRVSLEQHY QPLPWIAPNE APHIPLSEDP NLIPQREIEY SGSSSFAAYS 240 SYLDLCKRAQ SGAFRDDSGF LSELGRSSPQ LISGQFSFPS YSANLLASDA KYPADTNLQN 300 SVHLEPQPTF GTHPAFDPNH SSWASAAGPF SDTMHSSWAS ACGPLADVTH SVWGSTSGPC 360 SATTANSNWA SPGSYPVALF DEHYQLPH*

Sequence ? help Back to Top

Protein Sequence Length: 389 aa Download sequence Send to blast

MGRVKLKIKR LENSNSRQTT YAKRKNGILK KANELAILCD IDILLLMFSP TGKPSLCCGK  60
RGVEEVIAKF AQLTPQERAK RQLEGLEALK KTFKKLDHDV NIQEFLGAST QTVEGMTEQM  120
VQIRAELEET QQRLSYWSDP SKIESLDHLG QMEDSLGKSL DAIRAHKENL EKQQLILQET  180
TAQIQNEMQM PYRVSLEQHY QPLPWIAPNE APHIPLSEDP NLIPQREIEY SGSSSFAAYS  240
SYLDLCKRAQ SGAFRDDSGF LSELGRSSPQ LISGQFSFPS YSANLLASDA KYPADTNLQN  300
SVHLEPQPTF GTHPAFDPNH SSWASAAGPF SDTMHSSWAS ACGPLADVTH SVWGSTSGPC  360
SATTANSNWA SPGSYPVALF DEHYQLPH*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms heterodimers with the MADS-box proteins AGL66 and AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016648084.1	1e-122	PREDICTED: agamous-like MADS-box protein AGL30 isoform X2
Refseq	XP_021807371.1	1e-122	agamous-like MADS-box protein AGL30 isoform X2
Swissprot	Q1PFA4	1e-93	AGL30_ARATH; Agamous-like MADS-box protein AGL30
TrEMBL	A0A2I4GQF3	1e-120	A0A2I4GQF3_JUGRE; agamous-like MADS-box protein AGL30 isoform X4
STRING	XP_004298422.1	1e-117	(Fragaria vesca)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03060.2	9e-78	AGAMOUS-like 30

Link Out ? help Back to Top
Phytozome	Kalax.0854s0011.1.p

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]