PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0859s0006.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 212aa    MW: 23138 Da    PI: 6.7183
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0859s0006.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.77.8e-202876355
                  AP2  3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         ++GVr ++ +gr++AeIrd ++    ++r++lg+f+ta+eAa+a++aa+++++g
  Kalax.0859s0006.1.p 28 FRGVRKRP-WGRYAAEIRDpFK----KTRVWLGTFDTADEAARAYDAAARSFRG 76
                         8*******.**********662....5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.03E-202784No hitNo description
PfamPF008472.6E-132776IPR001471AP2/ERF domain
PROSITE profilePS5103223.6442784IPR001471AP2/ERF domain
SMARTSM003803.2E-372790IPR001471AP2/ERF domain
PRINTSPR003677.8E-112839IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.9E-312884IPR001471AP2/ERF domain
SuperFamilySSF541712.42E-222885IPR016177DNA-binding domain
PRINTSPR003677.8E-115066IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MRKVKVAAVA GHDHAGPEMR DPESEIRFRG VRKRPWGRYA AEIRDPFKKT RVWLGTFDTA  60
DEAARAYDAA ARSFRGPKAR TNFPFPSSPP LHPPVTLNPL PPPPLSYHNP AHMFSAQYIH  120
RPASSSMSST VETFSGPKLS NPLAALPSTR VLFHQPVPEE GPDCHSDCDS SSSVVNFEEG  180
GAWGVPDLNL PPPMDDADMN CDDLDATALR L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-2027841472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of gene expression by abscisic acid, stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Part of a transcriptional repressor complex including a histone deacetylase. {ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:15994908}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022947976.15e-47ethylene-responsive transcription factor 3-like
RefseqXP_022970780.15e-47ethylene-responsive transcription factor 3-like
RefseqXP_022970781.15e-47ethylene-responsive transcription factor 3-like
RefseqXP_023534086.15e-47ethylene-responsive transcription factor 3-like
SwissprotQ9LDE42e-31ERF83_ARATH; Ethylene-responsive transcription factor 7
TrEMBLA0A0V0HV086e-48A0A0V0HV08_SOLCH; Putative ethylene-responsive transcription factor 3-like
STRINGXP_008456400.12e-45(Cucumis melo)
STRINGXP_004143195.12e-45(Cucumis sativus)
STRINGXP_004172004.12e-45(Cucumis sativus)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28370.18e-22ERF domain protein 11
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Giuntoli B,Perata P
    Group VII Ethylene Response Factors in Arabidopsis: Regulation and Physiological Roles.
    Plant Physiol., 2018. 176(2): p. 1143-1155
    [PMID:29269576]