PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0868s0019.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family B3
Protein Properties Length: 272aa    MW: 30932.8 Da    PI: 9.3875
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0868s0019.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.64.6e-1821111198
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                          ffkv+++ +  +s+r+ +pk f+e +++++ e+   +l  +sg++W+v +   kk  + ++ +GWk F ++n + e Df+vF+++g+++f
  Kalax.0868s0019.1.p  21 FFKVFIRQY--NSDRMLIPKGFMEGIMKQE-EEACASLVGPSGEKWQVII--IKKEAKWFIDEGWKVFWEDNSIAETDFLVFTYVGKMKF 105
                          889995555..56789*********97665.4468***************..78888889**************************9999 PP

                          ..EEEEE- CS
                   B3  91 elvvkvfr 98 
                            +vk+f 
  Kalax.0868s0019.1.p 106 --YVKIFG 111
                          ..9*9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.2E-2116115IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-2016115IPR015300DNA-binding pseudobarrel domain
CDDcd100172.26E-1519110No hitNo description
PROSITE profilePS5086312.53419113IPR003340B3 DNA binding domain
SMARTSM010191.8E-1421113IPR003340B3 DNA binding domain
PfamPF023621.6E-1521110IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.5E-5164264IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.33E-7165266IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MSGDDALGGR FKRGEDHQPM FFKVFIRQYN SDRMLIPKGF MEGIMKQEEE ACASLVGPSG  60
EKWQVIIIKK EAKWFIDEGW KVFWEDNSIA ETDFLVFTYV GKMKFYVKIF GPRGCQKPSA  120
HLAKCTKDNR STFTASQQKA RVPEKKPRGR PHLVSAEERR VADSFTSKHP FFVRTLHWKA  180
NKSPVLHLPQ SFLNGHALTC FHNENISLIN RNGYCLLVKV VEYPYVFSLC RGLAGFLHES  240
RASHGDILIL EVLDASPLKL MVHVVDGTIE P*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06160.16e-14B3 family protein