PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0868s0020.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family B3
Protein Properties Length: 354aa    MW: 40086 Da    PI: 4.8543
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0868s0020.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.92.7e-16181011198
                          HHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                   B3  11 lksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                            +++l +p++f+++ gg + ++ ++++  + g   W vk+  ++ + +y +++GW eFv++n+L  gD++vF+++  ++f+++vkvf 
  Kalax.0868s0020.1.p  18 Y-KHQLEVPRQFVRHLGGRPVGEYQMRVWGSAGsYCWIVKV--ERDGAEYCFKNGWPEFVEDNDLGFGDVLVFSYE--EKFKFFVKVFA 101
                          3.35699******988************99888689*****..*******************************85..69999***996 PP
2B344.52.9e-142563361398
                          TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                   B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                          ++ +++pk+ a e ++ +++  +l+++d++ + W +kl+ +  +g++ lt+ W +F +++gLk+gD++vF+++g++    +v++++
  Kalax.0868s0020.1.p 256 QHHMTIPKEIAVEKDLYSKS--QLVVRDSNEKLWFMKLS-TAEDGSVNLTEKWASFYESHGLKQGDSCVFEFIGSRI--VHVQIIS 336
                          3559*******999777444..6***************4.77778899***********************998444..4888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.0E-167103IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.3797103IPR003340B3 DNA binding domain
SuperFamilySSF1019362.55E-178103IPR015300DNA-binding pseudobarrel domain
CDDcd100174.84E-149100No hitNo description
SMARTSM010191.8E-1110103IPR003340B3 DNA binding domain
PfamPF023621.0E-1310101IPR003340B3 DNA binding domain
PROSITE profilePS5086312.097244338IPR003340B3 DNA binding domain
SMARTSM010196.2E-6247338IPR003340B3 DNA binding domain
SuperFamilySSF1019361.65E-16247337IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-15253338IPR015300DNA-binding pseudobarrel domain
CDDcd100171.42E-9256336No hitNo description
PfamPF023621.2E-11256336IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MRHVADRASF MKLMIHDYKH QLEVPRQFVR HLGGRPVGEY QMRVWGSAGS YCWIVKVERD  60
GAEYCFKNGW PEFVEDNDLG FGDVLVFSYE EKFKFFVKVF APSGLKRNMP SLRGEEEEEV  120
AVETPLQSDG ESEDGQNMPM DLDEQPIFYV DEEGECHVGA GGKRVQVSME TSQEESLCHM  180
EIGGEKEKEG HGCADSTQKG SVGCSDMRGH GKGELTRKES LFWFEDKAKE SIEERIAPPL  240
ISDRSRFIAT WSSTWQHHMT IPKEIAVEKD LYSKSQLVVR DSNEKLWFMK LSTAEDGSVN  300
LTEKWASFYE SHGLKQGDSC VFEFIGSRIV HVQIISASSV MSHAGVEDVL LRD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.14e-09B3 family protein