PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0870s0013.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

bZIP

Protein Properties

Length: 544aa MW: 59953.7 Da PI: 6.9917

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0870s0013.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.9	1.4e-10	236	278	4	46
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLk 46 k rr+++NReAAr+sR+RKka++++Le +L++ ++L+ Kalax.0870s0013.1.p 236 AKTLRRLAQNREAARKSRLRKKAYVQQLESSRIKLSQLEQDLQ 278 5889*************************98888887777665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.2E-6	233	309	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.197	235	279	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	8.0E-8	236	278	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	5.95E-7	237	280	No hit	No description
CDD	cd14708	1.70E-22	237	288	No hit	No description
Gene3D	G3DSA:1.20.5.170	4.5E-8	238	282	No hit	No description
PROSITE pattern	PS00036	0	240	255	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	6.2E-31	317	392	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 544 aa Download sequence Send to blast
MANHQTRVVG SGLSDSSGPS NHHMSPFASL LHHQQHPNGI VAHASSSTGF IHQEGSAFDF 60 GELEEAIVLQ GAAQFRDDEA KASLFSGRPA ATLEMFPAWP MRFQQAQQRG SSRSGGDDCT 120 DSGSALNTLS SKGGGGDQVR FDQESPISKK PSSSTVEHHR QQQQHQQLQQ QQHQQHQQAV 180 GGDMMTGDHD NSTRTGVATI VEPGGYQNQQ PSSSSARPIS EKKKGVGSTS ERILDAKTLR 240 RLAQNREAAR KSRLRKKAYV QQLESSRIKL SQLEQDLQRT RSQGYFLGAG GAGASISSGA 300 AMFDMEYARW LDDDLRHMAD LRTALQANLS EGDLRVIIDD HLSHYDEIFQ LKAVAAKTDV 360 FHLITGMWAT PAERCFLWMG GFRPSELIKI VIPQADPLTE QQLLGIYSLQ HSSQQAEEAL 420 SQGLDQLQQS LVDTIAGGPV VMDGMHQMAT ALGKLSNLEG FVRQADNLRQ QTLHQLHRIL 480 TVRQAARCFL AIGEYYGRLR ALSSLWASRP RETLINDDNS CQTTTDLQMV QHSQSHHFSN 540 FER*

Sequence ? help Back to Top

Protein Sequence Length: 544 aa Download sequence Send to blast

MANHQTRVVG SGLSDSSGPS NHHMSPFASL LHHQQHPNGI VAHASSSTGF IHQEGSAFDF  60
GELEEAIVLQ GAAQFRDDEA KASLFSGRPA ATLEMFPAWP MRFQQAQQRG SSRSGGDDCT  120
DSGSALNTLS SKGGGGDQVR FDQESPISKK PSSSTVEHHR QQQQHQQLQQ QQHQQHQQAV  180
GGDMMTGDHD NSTRTGVATI VEPGGYQNQQ PSSSSARPIS EKKKGVGSTS ERILDAKTLR  240
RLAQNREAAR KSRLRKKAYV QQLESSRIKL SQLEQDLQRT RSQGYFLGAG GAGASISSGA  300
AMFDMEYARW LDDDLRHMAD LRTALQANLS EGDLRVIIDD HLSHYDEIFQ LKAVAAKTDV  360
FHLITGMWAT PAERCFLWMG GFRPSELIKI VIPQADPLTE QQLLGIYSLQ HSSQQAEEAL  420
SQGLDQLQQS LVDTIAGGPV VMDGMHQMAT ALGKLSNLEG FVRQADNLRQ QTLHQLHRIL  480
TVRQAARCFL AIGEYYGRLR ALSSLWASRP RETLINDDNS CQTTTDLQMV QHSQSHHFSN  540
FER*

Functional Description ? help Back to Top
Source	Description
UniProt	Together with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269\|PubMed:20805327, ECO:0000269\|PubMed:27717447}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by flg22 in leaves. {ECO:0000269\|PubMed:27717447}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024464905.1	0.0	transcription factor TGA9 isoform X1
Swissprot	Q93XM6	0.0	TGA9_ARATH; Transcription factor TGA9
TrEMBL	A0A2I4KKY6	0.0	A0A2I4KKY6_POPTR; BZIP family protein
STRING	XP_006487948.1	0.0	(Citrus sinensis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.2	1e-162	bZIP family protein

Link Out ? help Back to Top
Phytozome	Kalax.0870s0013.1.p

Publications ? help Back to Top
Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22. Plant Sci., 2016. 252: p. 12-21 [PMID:27717447] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]