PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0870s0014.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 385aa    MW: 42524.8 Da    PI: 7.8146
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0870s0014.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.72.1e-05217236120
                          EEETTTTEEESSHHHHHHHH CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                          + C++C+k+F+r  n++ H+
  Kalax.0870s0014.1.p 217 FACSICTKTFNRYNNMQMHM 236
                          78*****************9 PP
2zf-C2H212.40.00049303323323
                          ETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                          C +C+ksF  k + ++H +++
  Kalax.0870s0014.1.p 303 CRKCSKSFAVKGDWRTHEKNC 323
                          *****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.98E-5212240No hitNo description
PROSITE profilePS5015710.45217244IPR007087Zinc finger, C2H2
SMARTSM003550.27217239IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.6E-5217236IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280219239IPR007087Zinc finger, C2H2
SMARTSM00355240264296IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.69E-5287321No hitNo description
Gene3DG3DSA:3.30.160.603.5E-4288321IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035591301321IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MMGFKIISSF YHAVEDAQSD GITMNNSNIN GSVFQSPPAF IEWLKPFPSS PLPTDASSSS  60
SPSSSETQQP QQQHMMVETP RLADHKPASA SVQCLPLLSK LVEDTSNHPP SSKPVKDEQQ  120
EEVDGDRRFG TLLQDDDKAT VALCIGLSTG TPSDYDLINL DGDGDLRGGA GDKMTSSAVK  180
KRASSFSDEY AAASSFNSES RFWIPTPAQI MVGPMQFACS ICTKTFNRYN NMQMHMWGHG  240
SEYRKGPESL KGSQPAAMLR LPCYCCAQGC KNNINHPRAK PLKDFRTLQT HFKRKHGSKP  300
FLCRKCSKSF AVKGDWRTHE KNCGKLWYCT CGSDFKHKRS LKDHIRSFGK GHSPYPPMEG  360
FQFDDKEQCV MAGSSEEDEV STAT*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021716386.11e-138zinc finger protein WIP3-like
SwissprotQ9SGD11e-120ZWIP3_ARATH; Zinc finger protein WIP3
TrEMBLW9QJ781e-133W9QJ78_9ROSA; Protein TRANSPARENT TESTA 1
STRINGXP_010089843.11e-134(Morus notabilis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08290.11e-118WIP domain protein 3
Publications ? help Back to Top
  1. Zhou X,Meier I
    Efficient plant male fertility depends on vegetative nuclear movement mediated by two families of plant outer nuclear membrane proteins.
    Proc. Natl. Acad. Sci. U.S.A., 2014. 111(32): p. 11900-5
    [PMID:25074908]