PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0872s0007.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family WOX
Protein Properties Length: 177aa    MW: 20018.6 Da    PI: 10.3766
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0872s0007.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.27.7e-20767357
                         --SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
             Homeobox  3 kRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                         +R+++t+eq+ +Lee +++   ++p+a ++++++++l    +++ ++V++WFqN++a+e++
  Kalax.0872s0007.1.p  7 SRWSPTQEQVMILEEIYNRggVKTPNAFQIQQITAHLsfygKIEGKNVFYWFQNHKARERQ 67
                         8*****************778**************************************97 PP
2Wus_type_Homeobox113.21.3e-36568264
    Wus_type_Homeobox  2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                         +++RW+Pt+eQ++iLee+y+  G++tPn+ +iq+ita+L+ yGkie+kNVfyWFQN+kaRerqk
  Kalax.0872s0007.1.p  5 SSSRWSPTQEQVMILEEIYNrGGVKTPNAFQIQQITAHLSFYGKIEGKNVFYWFQNHKARERQK 68
                         689****************9789****************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.187268IPR001356Homeobox domain
SMARTSM003895.9E-5472IPR001356Homeobox domain
SuperFamilySSF466891.33E-11571IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-8767IPR009057Homeodomain-like
PfamPF000461.9E-17767IPR001356Homeobox domain
CDDcd000863.26E-5868No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MNGSSSSRWS PTQEQVMILE EIYNRGGVKT PNAFQIQQIT AHLSFYGKIE GKNVFYWFQN  60
HKARERQKLR RKLMQSQQSQ SHRQLLHHSS LRHHHSSLPS AALKPLHQGA GKHHQEDCAT  120
SRPALADKPI SPQPHCSVIV PQQRPLKTLE LFPLRSTHLN LNADPDDKDP TSPSSC*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010259966.11e-42PREDICTED: WUSCHEL-related homeobox 3-like
TrEMBLA0A1U8ADW12e-41A0A1U8ADW1_NELNU; WUSCHEL-related homeobox 3-like
STRINGXP_010259966.14e-42(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28610.13e-36WOX family protein