PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0872s0019.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family LBD
Protein Properties Length: 216aa    MW: 23414.7 Da    PI: 6.3397
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0872s0019.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601352.8e-42361351100
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                          +CaaCk+lrr+Ca++C+lapyfp ++p+kf ++h++FGasn++kll++lpe +r da+ss+vyeA ar+rdPvyG++g i +lq+++++l
  Kalax.0872s0019.1.p  36 PCAACKILRRRCADKCILAPYFPPTEPQKFTIAHRVFGASNIIKLLQDLPEAQRADAVSSMVYEASARIRDPVYGCAGAICHLQNHVREL 125
                          7***************************************************************************************** PP

               DUF260  91 kaelallkee 100
                          +a+la+ k+e
  Kalax.0872s0019.1.p 126 QAQLAKSKAE 135
                          *****99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.17235136IPR004883Lateral organ boundaries, LOB
PfamPF031951.8E-4236133IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MEHSERSWRS SATPSRISSP SSSPPPPQTT TVIMSPCAAC KILRRRCADK CILAPYFPPT  60
EPQKFTIAHR VFGASNIIKL LQDLPEAQRA DAVSSMVYEA SARIRDPVYG CAGAICHLQN  120
HVRELQAQLA KSKAEIVNLQ AHQAQLVALI CVEVSSAQPN NNTTKTASDQ LFDCGGFFGS  180
PLAEEVYSGL GFEVESDGMG SMGWEMPLWP DMMIS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-41291384113LOB family transfactor Ramosa2.1
5ly0_B3e-41291384113LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024160819.12e-77LOB domain-containing protein 1-like
SwissprotQ9SK086e-67LBD11_ARATH; LOB domain-containing protein 11
TrEMBLA0A2P6QHT34e-76A0A2P6QHT3_ROSCH; Putative transcription factor AS2-LOB family
STRINGGLYMA13G40370.21e-76(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28500.14e-69LOB domain-containing protein 11