PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0880s0007.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HD-ZIP
Protein Properties Length: 252aa    MW: 28162.1 Da    PI: 9.4345
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0880s0007.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.62.5e-19114168256
                          T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          rk+ +++k+q ++Lee F+++++++ ++++ LA++l+L+ rqV vWFqNrRa+ k
  Kalax.0880s0007.1.p 114 RKKLRLKKDQAQVLEERFKQQSTLNPKQKQALARQLNLSPRQVEVWFQNRRARTK 168
                          6778899**********************************************98 PP
2HD-ZIP_I/II118.92.8e-38114202190
          HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                          +kk+rl+k+q+++LEe F+++++L+p++K++lar+L+l+prqv+vWFqnrRARtk+kq+E+dye+Lk+++++l+een+rL ke +eL+ +
  Kalax.0880s0007.1.p 114 RKKLRLKKDQAQVLEERFKQQSTLNPKQKQALARQLNLSPRQVEVWFQNRRARTKLKQTEQDYEYLKKCCETLTEENRRLIKELKELK-A 202
                          69*************************************************************************************9.4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.7E-1898172IPR009057Homeodomain-like
SuperFamilySSF466891.92E-18102171IPR009057Homeodomain-like
PROSITE profilePS5007117.572110170IPR001356Homeobox domain
SMARTSM003892.4E-15112174IPR001356Homeobox domain
PfamPF000468.9E-17114168IPR001356Homeobox domain
CDDcd000867.42E-17114171No hitNo description
PROSITE patternPS000270145168IPR017970Homeobox, conserved site
SMARTSM003401.4E-18170213IPR003106Leucine zipper, homeobox-associated
PfamPF021836.2E-10170204IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MDYHGCSNIG LNLKLGSEFA GHPPRTLTHI NLNRKNDQAL MKPCFELPLL SLGLGHHEDG  60
GNQVDQGIVV KPGVKGETSG QSTVSSFSNS GLSVKRERSY EDEDYNCFSN DGVRKKLRLK  120
KDQAQVLEER FKQQSTLNPK QKQALARQLN LSPRQVEVWF QNRRARTKLK QTEQDYEYLK  180
KCCETLTEEN RRLIKELKEL KALKPAQPNC ITLPAATLSI CPSCEGVKTT PARGDCPAKP  240
KFFNTAPSAA Y*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1162170RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021631568.13e-64homeobox-leucine zipper protein HAT22-like
SwissprotP466042e-54HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLA0A2C9UQH46e-63A0A2C9UQH4_MANES; Uncharacterized protein
STRINGcassava4.1_013986m1e-63(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.12e-45HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]