PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0887s0006.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

MYB_related

Protein Properties

Length: 440aa MW: 49106.2 Da PI: 8.3705

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0887s0006.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	44.7	3e-14	50	94	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT +E+ +++da k++G W+ I + +g ++t+ q++s+ qk+ Kalax.0887s0006.1.p 50 REKWTDQEHHKFLDALKLYGRA-WRQIEEFVG-TKTAVQIRSHAQKF 94 789***************88.*****.**********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	5.91E-15	44	97	IPR009057	Homeodomain-like
PROSITE profile	PS51294	19.365	45	99	IPR017930	Myb domain
TIGRFAMs	TIGR01557	6.6E-16	48	97	IPR006447	Myb domain, plants
SMART	SM00717	3.7E-10	49	97	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.1E-7	50	90	IPR009057	Homeodomain-like
Pfam	PF00249	1.0E-11	50	93	IPR001005	SANT/Myb domain
CDD	cd00167	2.21E-7	52	95	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 440 aa Download sequence Send to blast
MDLIQTQPPL KDTATTLLLP QFKGSSSPLN QNDHLITPKL RKPYTITKQR EKWTDQEHHK 60 FLDALKLYGR AWRQIEEFVG TKTAVQIRSH AQKFFSKVVR GGNDSNECPV EAIEIPPPRP 120 KRKPTHPYPR KLVDSQNNMI SPSYQPGKRI CPHVLTTDSE NQSPNSVLSA ATATPHKLEL 180 PISDMPDSCL STSSCSSDLQ SGSFFSVDKE DGFKAINSTQ YKGKHVLPTI KRSASSSVDN 240 LPNLENKSFE EEADLPEATI MLFGQVLYTK DSQRPSTGGK GTFNPSEQQL AKTGNKHGKL 300 DESPALNNLD SQLSHGMYYE NWRPWSWNEM NSDLRGGSSC QWMPLPLYGG LPPPYHISCS 360 NAPTSSFVAE RTDGYSFMVK NDFTEETKDT AEAVTNIASP KRSYKSGFVP YKRCSAPENI 420 KSAKAMTKEE DDQRVRLCL*

Sequence ? help Back to Top

Protein Sequence Length: 440 aa Download sequence Send to blast

MDLIQTQPPL KDTATTLLLP QFKGSSSPLN QNDHLITPKL RKPYTITKQR EKWTDQEHHK  60
FLDALKLYGR AWRQIEEFVG TKTAVQIRSH AQKFFSKVVR GGNDSNECPV EAIEIPPPRP  120
KRKPTHPYPR KLVDSQNNMI SPSYQPGKRI CPHVLTTDSE NQSPNSVLSA ATATPHKLEL  180
PISDMPDSCL STSSCSSDLQ SGSFFSVDKE DGFKAINSTQ YKGKHVLPTI KRSASSSVDN  240
LPNLENKSFE EEADLPEATI MLFGQVLYTK DSQRPSTGGK GTFNPSEQQL AKTGNKHGKL  300
DESPALNNLD SQLSHGMYYE NWRPWSWNEM NSDLRGGSSC QWMPLPLYGG LPPPYHISCS  360
NAPTSSFVAE RTDGYSFMVK NDFTEETKDT AEAVTNIASP KRSYKSGFVP YKRCSAPENI  420
KSAKAMTKEE DDQRVRLCL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17300.1	3e-33	MYB_related family protein

Link Out ? help Back to Top
Phytozome	Kalax.0887s0006.1.p