PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0892s0011.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB_related
Protein Properties Length: 350aa    MW: 38757.3 Da    PI: 5.9735
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0892s0011.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding551.9e-171562148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT+eEd++lvd ++  G g+W++ ++  g++R++k+c++rw +yl
  Kalax.0892s0011.1.p 15 KGPWTPEEDKKLVDHIETNGHGSWRALPKLAGLNRCGKSCRLRWTNYL 62
                         79********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.7591066IPR017930Myb domain
SMARTSM007174.1E-141464IPR001005SANT/Myb domain
PfamPF002495.0E-161562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-231669IPR009057Homeodomain-like
SuperFamilySSF466891.22E-221689IPR009057Homeodomain-like
CDDcd001673.45E-111762No hitNo description
PROSITE profilePS512949.52567106IPR017930Myb domain
SMARTSM007177.4E-467104IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-1270106IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MMGRSAGIDE HGLKKGPWTP EEDKKLVDHI ETNGHGSWRA LPKLAGLNRC GKSCRLRWTN  60
YLRPDIKRGK FSEEEEQAII NLHSVLGNKT DNEIKNFWNT HLKKKLLQMG IDPITHRPRT  120
DHLNLLANLP QLLAAANLTH LISNSANPWD NAMRLQQHLS SADHQQHLAK VQLMNNLLQA  180
LNSAANPPLN LDLMMSSLFG KQGSFQDQRV LESLVRMNNS SQMEASDDEF GNGGQIGHFS  240
AGLCDHMQLD DFTTLGSCEP FLNSNSSQFG GSYCAPFGDY ISEIPALVSA TSPERGISSI  300
NETTDNSKYP SAEASNPTSM TSTTFEAWGD HHQMVGDEAS ESYWKDIIE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-20131065108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022746687.11e-109transcription factor MYB41-like
TrEMBLA0A061EYD81e-103A0A061EYD8_THECC; Myb domain protein 107
STRINGEOY101101e-104(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.28e-76myb domain protein 9