PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0901s0006.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

WOX

Protein Properties

Length: 285aa MW: 31821.2 Da PI: 5.8497

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0901s0006.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	65.8	6e-21	102	162	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+++t+ ql++Le+ F k n +ps++++++++++l +++e++V++WFqNrRa+ k+ Kalax.0901s0006.1.p 102 RQRWAPTPAQLQILENIFDKgNGTPSKQKIKDITSELsqhgQVSETNVYNWFQNRRARAKR 162 89***************99************************************97 PP
2	Wus_type_Homeobox	100.2	1.5e-32	101	164	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RW+Ptp Q++iLe+++++G tP+k++i++it+eL+++G+++++NV++WFQNr+aR ++kq Kalax.0901s0006.1.p 101 ARQRWAPTPAQLQILENIFDKGNGTPSKQKIKDITSELSQHGQVSETNVYNWFQNRRARAKRKQ 164 689***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.3E-17	96	166	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.884	98	163	IPR001356	Homeobox domain
SMART	SM00389	2.1E-14	100	167	IPR001356	Homeobox domain
SuperFamily	SSF46689	3.94E-18	101	164	IPR009057	Homeodomain-like
CDD	cd00086	4.01E-14	102	164	No hit	No description
Pfam	PF00046	1.0E-18	102	162	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence Send to blast
MEWEKQPPQH HHHHVHSHGG DALIGEGDAA AAAGLLQEQL VVMTDEQIEI LRKQIAVYTV 60 LCDKLVEMHR SLSSQRDLSG VRFGNTYCDQ LLISSGHKIS ARQRWAPTPA QLQILENIFD 120 KGNGTPSKQK IKDITSELSQ HGQVSETNVY NWFQNRRARA KRKQTVPATN NNETDGIKEV 180 DSSNEKKAKE ENFQSHQIPC SLSDDSCYQS SAMNSDLHSF DPLSSKAEAM FSSEDDLKPP 240 TTLGDISFYD SILSNRRVDQ LSGAVEVEGG YHPYHQTDDY NLMG*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	155	163	RRARAKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023893569.1	1e-108	WUSCHEL-related homeobox 13
Swissprot	Q5QMM3	5e-79	WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBL	M0ZMN1	1e-106	M0ZMN1_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400003980	1e-107	(Solanum tuberosum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	6e-67	WUSCHEL related homeobox 13

Link Out ? help Back to Top
Phytozome	Kalax.0901s0006.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]