PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0901s0011.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

NAC

Protein Properties

Length: 337aa MW: 37730.5 Da PI: 8.7071

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0901s0011.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	175.9	1.1e-54	20	147	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 lppGfrFhPtdeelv++yL++kv+++ + + +i e+d++k+ePwdLp ++ +++kewyfFs +d+ky+tg r+nrat+sgyWkatgkd Kalax.0901s0011.1.p 20 LPPGFRFHPTDEELVSHYLAPKVSDSAFLC-LAIGEADLNKCEPWDLPwRAKMGGDKEWYFFSLKDRKYPTGLRTNRATRSGYWKATGKD 108 79***********************888.67***********644445789***************************** PP NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 ke+++ ++lvg+kktLvfy+grapkg kt+Wvmhe+rle Kalax.0901s0011.1.p 109 KEIYK-MKALVGMKKTLVFYRGRAPKGDKTNWVMHEFRLE 147 *.999**************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.49E-60	17	167	IPR003441	NAC domain
PROSITE profile	PS51005	56.938	20	167	IPR003441	NAC domain
Pfam	PF02365	1.9E-29	21	146	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 337 aa Download sequence Send to blast
MEQAAGEKGR CEEDGQRLEL PPGFRFHPTD EELVSHYLAP KVSDSAFLCL AIGEADLNKC 60 EPWDLPWRAK MGGDKEWYFF SLKDRKYPTG LRTNRATRSG YWKATGKDKE IYKMKALVGM 120 KKTLVFYRGR APKGDKTNWV MHEFRLEGKC CLPKKNNEWV ISRVFEKCSG GKKTHVTNLG 180 QSCLPQLVDS SPKRSATEGD VSNPVETTRS QKAREEEAAV DSYLSNSITP SSSSPKHTSI 240 IPSVSQFVPS FTTHPQQASA AMQDLRNILL EKNKNWTFKT EHQHPTGLPC YMNNSQPPNA 300 SHNGGTFHHM SVVGQNDHSA AGGLSDLDAI WNYFMQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-49	17	173	14	171	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-49	17	173	14	171	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-49	17	173	14	171	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-49	17	173	14	171	NO APICAL MERISTEM PROTEIN
4dul_A	2e-49	17	173	14	171	NAC domain-containing protein 19
4dul_B	2e-49	17	173	14	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023887029.1	1e-102	NAC domain-containing protein 100-like
Swissprot	Q9FLJ2	5e-92	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A0P0K449	2e-97	A0A0P0K449_PRUPE; NAC transcription factor NAC4
TrEMBL	M5WSZ2	3e-97	M5WSZ2_PRUPE; Uncharacterized protein
STRING	EMJ16814	5e-98	(Prunus persica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	1e-90	NAC domain containing protein 100

Link Out ? help Back to Top
Phytozome	Kalax.0901s0011.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]