PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0904s0001.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

C2H2

Protein Properties

Length: 221aa MW: 23955.1 Da PI: 7.0478

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0904s0001.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.9	0.0007	146	168	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +Cg F + L H+r+H Kalax.0904s0001.1.p 146 HECAICGAEFASGQALGGHMRRH 168 78********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13912	4.0E-12	79	104	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	9.54E-8	79	102	No hit	No description
PROSITE profile	PS50157	10.575	80	107	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.19	80	102	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	82	102	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	9.54E-8	141	168	No hit	No description
Pfam	PF13912	9.4E-12	145	169	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.093	146	168	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.473	146	173	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	148	168	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 221 aa Download sequence Send to blast
MGGLKLSPPP TTNFSSLSSE DQMPLATEEE EEEDREVAKC LILLAQAHDP PRIGGLEMMS 60 SRKWWSLEDK KQVNRGGGVY ECKTCNRSFH SFQALGGHRT SHKKPRITTH DETPLVSKSP 120 HMGVNVPVPT IAALQLGSRT AKTRVHECAI CGAEFASGQA LGGHMRRHRV TNSPLETSTT 180 ETKVAAAEDG ARITLSLLAP PAPEEASSRS DHNELLCPWI *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010243202.1	7e-42	PREDICTED: zinc finger protein ZAT5
TrEMBL	A0A1U7Z6Q2	2e-40	A0A1U7Z6Q2_NELNU; zinc finger protein ZAT5
STRING	XP_010243202.1	3e-41	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04390.1	2e-32	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Kalax.0904s0001.1.p