PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0906s0008.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

G2-like

Protein Properties

Length: 293aa MW: 32811.1 Da PI: 4.6511

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0906s0008.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	94.4	8.8e-30	165	218	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +prl+Wtp+LH+rFve+v++L G ++A+Pkti+++m+v+gLt+e+v+SHLQkYRl Kalax.0906s0008.1.p 165 RPRLVWTPQLHKRFVEVVSHL-GLNNAVPKTIMQMMNVDGLTRENVASHLQKYRL 218 59*****************.9*****************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.144	162	221	IPR017930	Myb domain
SuperFamily	SSF46689	6.99E-20	163	222	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.8E-29	164	222	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	8.4E-24	166	218	IPR006447	Myb domain, plants
Pfam	PF00249	1.2E-8	168	217	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 293 aa Download sequence Send to blast
MGSNPTRSMD DLDTDVNHLQ EEEEEEEEED DDDDQRVSEW EAGLPNLHDL TPLTQPLIPH 60 DLATAFSISP EPYRTIIDVT RASDNTVSTL RCASGSFPPS NNSSNKAPPP PQLLADSTTI 120 MLIDDDAIAN ARKSRRLDSV TEEADSALRA DDSAEDQSSA RALKRPRLVW TPQLHKRFVE 180 VVSHLGLNNA VPKTIMQMMN VDGLTRENVA SHLQKYRLYL KRQSGEGTVL SDQLFSSEPF 240 PQHLRHQPPQ PPVMPIGIHS SNGQPYNAFD SHYHFSMMQH QQQQRDWSSA NN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5lxu_A	3e-31	165	221	1	57	Transcription factor LUX
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that is essential for the generation of the circadian clock oscillation. Is necessary for activation of CCA1 and LHY expression. Is coregulated with TOC1 and seems to be repressed by CCA1 and LHY by direct binding of these proteins to the evening element in the LUX promoter. Directly regulates the expression of PRR9, a major component of the morning transcriptional feedback circuit, by binding specific sites on PRR9 promoter. Binds to its own promoter, inducing a negative auto-regulatory feedback loop within the core clock. Binds to ELF3 and associates with ELF4 in a diurnal complex which is required for the expression of the growth-promoting transcription factors PIF4 and PIF5 and subsequent hypocotyl growth in the early evening. {ECO:0000269\|PubMed:16006522, ECO:0000269\|PubMed:16164597, ECO:0000269\|PubMed:21236673, ECO:0000269\|PubMed:21753751, ECO:0000269\|PubMed:22311777}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian oscillation with peaks at subjective dusk. {ECO:0000269\|PubMed:16006522, ECO:0000269\|PubMed:16164597, ECO:0000269\|PubMed:17132630, ECO:0000269\|PubMed:21753751}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028121610.1	7e-82	transcription factor PCL1
Refseq	XP_028121611.1	7e-82	transcription factor PCL1
Swissprot	Q9SNB4	8e-64	PCL1_ARATH; Transcription factor LUX
TrEMBL	A0A251M2V0	3e-80	A0A251M2V0_MANES; Uncharacterized protein
STRING	cassava4.1_011601m	5e-81	(Manihot esculenta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G46640.2	9e-60	G2-like family protein

Link Out ? help Back to Top
Phytozome	Kalax.0906s0008.1.p

Publications ? help Back to Top
Higham CF,Husmeier D A Bayesian approach for parameter estimation in the extended clock gene circuit of Arabidopsis thaliana. BMC Bioinformatics, 2013. 14 Suppl 10: p. S3 [PMID:24267177]