PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0923s0002.4.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 513aa    MW: 57166.2 Da    PI: 4.7036
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0923s0002.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.46.9e-15319361754
                          HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          + Er RRd++N+++ +L++l+P++     kK + a+i+e A+eYIk+L
  Kalax.0923s0002.4.p 319 ATERDRRDNLNNKYTTLKSLIPSP-----KKTDRASIVEDAIEYIKEL 361
                          78**********************.....9****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.383312361IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.45E-12314363No hitNo description
SuperFamilySSF474595.13E-15314377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-12318367IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-12318361IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-13319386IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 513 aa     Download sequence    Send to blast
MQMIQTGTCV AMYEETACFD PNPIADEGAI QVISNDLASI PPHGNMESSI AIPHFDFDEN  60
VKFPVDEFFY KSSSKEDSMV APTNVVASSA VGTEFQQQMA YDVENCYYGT ESDSRMQEAI  120
HEVNQALSYE QSNWVASGDY EVQDMCYSSE NQQQMLQDEL VHNGQGIYTS SSVLDVPHPS  180
APDLLHLLHL PRSPSSASFL PNSTISFVNA SQSSTNFQNG AGLMDAASSS AMFYDPLLHL  240
NLPPQPPVFK DLFQSLPHGF NLPVPMNGSL FARMDEMERS RGLYHDVDGH LIDDGVLEFT  300
ADMPPQMVKG RNGKLKPFAT ERDRRDNLNN KYTTLKSLIP SPKKTDRASI VEDAIEYIKE  360
LTRTINELKV LVEKKRRVKE RMKMLKTEAS PDPESSSDVK HNGELNEPLR SSWLQRKSKD  420
TEVDVRIIDD ELTVKLSQRK KANCLLTMSK ILEELQLDLQ HVSGGQVGDF YSFFCNTKIG  480
ETSCVYAGGI AKRLIEGVER QQAGLGTNNI SF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1373378KKRRVK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31210.17e-54bHLH family protein