PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0935s0001.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB_related
Protein Properties Length: 211aa    MW: 23229.2 Da    PI: 4.9131
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0935s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.22.4e-153476145
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                         rg+ T+eE++ ++++++  G++ W+ Ia+ ++ gRt++++k++w+
  Kalax.0935s0001.1.p 34 RGNYTKEEEDTIIRLHESVGNK-WSVIAAQLP-GRTDNEIKNHWH 76
                         899*******************.*********.***********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.298128IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.8E-111440IPR009057Homeodomain-like
SuperFamilySSF466894.6E-221585IPR009057Homeodomain-like
PROSITE profilePS5129423.0062983IPR017930Myb domain
SMARTSM007172.5E-143381IPR001005SANT/Myb domain
PfamPF002493.6E-143476IPR001005SANT/Myb domain
CDDcd001674.52E-113676No hitNo description
Gene3DG3DSA:1.10.10.603.7E-204180IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MSMSMIMLVA LGLARCGKSC RLRWLNYLKP DLKRGNYTKE EEDTIIRLHE SVGNKWSVIA  60
AQLPGRTDNE IKNHWHGKLK KMLKTAPSLK DKCKATSSTY KGLTDLEADK TPTDDSVSCC  120
LQGQQKQSSS SSASSSSDDM YSDMSGDLWK DPFVADGAYN YVGPADDYFH YVDSFAAAAD  180
IGYEGLLSFP CPSDVPTADE DEFLVPLWLA *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-1988532110B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021689975.12e-45transcription factor MYB30-like
TrEMBLA0A1U8JVI82e-42A0A1U8JVI8_GOSHI; myb-related protein Myb4-like
STRINGXP_006469810.12e-41(Citrus sinensis)
STRINGXP_006447415.12e-41(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16490.15e-38myb domain protein 58