PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0938s0006.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 229aa    MW: 25254.1 Da    PI: 11.3262
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0938s0006.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.81.1e-171459148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         rg+W++eEd++l ++vk+ G ++W++  + m+  Rt+k+c++rw+++l
  Kalax.0938s0006.1.p 14 RGPWSPEEDDQLRKLVKKNGRRNWSKLGSFMN--RTGKSCRLRWHNHL 59
                         89*****************************7..************97 PP
2Myb_DNA-binding49.78.4e-1670112347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          + T++Ed+ +v  +k+ G++ W++Ia++++ gRt++q+k+rw++ 
  Kalax.0938s0006.1.p  70 PITPQEDKVIVTMHKRVGNR-WSLIAQKLP-GRTDNQVKNRWNST 112
                          67******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.762963IPR017930Myb domain
SuperFamilySSF466891.04E-2912109IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-201261IPR009057Homeodomain-like
SMARTSM007179.6E-171361IPR001005SANT/Myb domain
PfamPF002492.6E-161459IPR001005SANT/Myb domain
CDDcd001679.36E-151659No hitNo description
SMARTSM007178.8E-1467115IPR001005SANT/Myb domain
PROSITE profilePS5129418.72769117IPR017930Myb domain
PfamPF002491.0E-1369112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.0E-2169114IPR009057Homeodomain-like
CDDcd001674.58E-1270113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MSENGEEGGD KLRRGPWSPE EDDQLRKLVK KNGRRNWSKL GSFMNRTGKS CRLRWHNHLK  60
PGVVPVTLGP ITPQEDKVIV TMHKRVGNRW SLIAQKLPGR TDNQVKNRWN STLRRRRQHA  120
LNQQQQRKAT GRATAPCANR VKPGPDLGGG CGSLAGPGRV SGPERLQYFG CIEGARSLMH  180
PVSPPAVRPF PCMAPPAPAN EPSSVIAQLK GVVEGICQEE LKLRNSML*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A6e-31111161104MYB PROTO-ONCOGENE PROTEIN
1mse_C6e-31121162104C-Myb DNA-Binding Domain
1msf_C6e-31121162104C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activation factor positively regulating trichomes development (PubMed:24803498). Has a function nearly equivalent to that of GL1 and can complement gl1 mutants (PubMed:24803498). {ECO:0000269|PubMed:24803498}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin (IAA). {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001147631.18e-35uncharacterized protein LOC100281240
SwissprotQ9LTF72e-31MYB82_ARATH; Transcription factor MYB82
TrEMBLA0A061REC31e-33A0A061REC3_9CHLO; Myb proto-oncogene protein (Fragment)
TrEMBLA0A3L6ENE52e-33A0A3L6ENE5_MAIZE; Transcription factor MYB44
TrEMBLB4FMQ32e-33B4FMQ3_MAIZE; MYB transcription factor
STRINGGRMZM2G145444_P013e-34(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52600.16e-34myb domain protein 82