PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0938s0013.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 222aa    MW: 24760.4 Da    PI: 4.6363
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0938s0013.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.43.4e-105396755
                         HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH  7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                           Er+RR+r+ +++  Lr+l+P+      + ++Ka+i   Av YI +Lq
  Kalax.0938s0013.1.p 53 LTERNRRQRLSERLLVLRSLVPNI-----TNMNKATIIVDAVSYIEELQ 96
                         57*********************6.....58*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.3734695IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-1446113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-1547111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.16E-104896No hitNo description
SMARTSM003531.8E-1052101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-75396IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048658Biological Processanther wall tapetum development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MGMCGLAGQM KHKGVILYEP VKIGESSNEG KSASNEAVGE NGEVRRFKSK NLLTERNRRQ  60
RLSERLLVLR SLVPNITNMN KATIIVDAVS YIEELQGCVE ELTNQLQEME AKVCSDDEER  120
EFQEGETSLM QEIIQTPIQA EVDLTVINHS KLWMKLVFTN RRGGFTQLME ALNYLGLEPT  180
DVSLTTSGGA VLVSLCLEGI YGQDLEVNKI KELLQDIIRN I*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00091SELEXTransfer from AT4G21330Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021809344.19e-54transcription factor DYT1-like
TrEMBLA0A2N9GEL93e-52A0A2N9GEL9_FAGSY; Uncharacterized protein
STRINGXP_008225011.15e-53(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21330.13e-28bHLH family protein