PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0951s0002.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C3H
Protein Properties Length: 314aa    MW: 34732.6 Da    PI: 8.4357
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0951s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH185.3e-064667426
                         ---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH  4 elCrffartGtCkyGdrCkFaHg 26
                         + C +++    C yG++C++ H+
  Kalax.0951s0002.1.p 46 AVCTYWMS-NRCVYGEKCRYLHS 67
                         67*****9.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.00194268IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.1124269IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.63E-64367IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-54767IPR000571Zinc finger, CCCH-type
SMARTSM003205389126IPR001680WD40 repeat
Gene3DG3DSA:2.130.10.104.2E-3493301IPR015943WD40/YVTN repeat-like-containing domain
SuperFamilySSF509786.78E-3495301IPR017986WD40-repeat-containing domain
SMARTSM003207.6E-6133170IPR001680WD40 repeat
PfamPF004000.0055135170IPR001680WD40 repeat
PROSITE profilePS5029417.93140219IPR017986WD40-repeat-containing domain
PROSITE profilePS5008212.647140179IPR001680WD40 repeat
PROSITE patternPS006780157171IPR019775WD40 repeat, conserved site
SMARTSM003201.8E-6173210IPR001680WD40 repeat
PfamPF004004.1E-5175209IPR001680WD40 repeat
PROSITE profilePS500829.539180209IPR001680WD40 repeat
SMARTSM00320300223259IPR001680WD40 repeat
SMARTSM0032015262300IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MATTTRMCGS RSWRRDVPRH QVDKFTATRD VKSPINKQQK QEDRLAVCTY WMSNRCVYGE  60
KCRYLHSWVL GDGAARIAQL RGKNAWNIET CATSNLTGPV GQVHAMAVAD QTLFAACQNG  120
DILAWKPCPE TQTFKLVAKL SGHTKAALSL SLGGDRLYSG SADETIRVWD THTLQCIQTL  180
SGHSGPVTCL ICWDSYLISG SLDATLKVWV CEQDGNIEEF YSHKEQRGIL ALNGVTGFGA  240
DAKPILFASC KDGSVLLYNL PTFHECGRLF TRQDVRSIQI CEARGLIFTG DSSGNVDVWR  300
WLGQPSRIVR HGK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ovp_B1e-151726294391F-box/WD repeat protein 7
2ovq_B1e-151726294391F-box/WD repeat protein 7
2ovr_B1e-151726294391F-box/WD repeat protein 7
5v4b_B1e-151726294391F-box/WD repeat-containing protein 7
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008232135.11e-84PREDICTED: zinc finger CCCH domain-containing protein 48-like
SwissprotQ0DYP57e-71C3H17_ORYSJ; Zinc finger CCCH domain-containing protein 17
STRINGXP_008232135.14e-84(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51980.15e-74C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]