PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0959s0005.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

LSD

Protein Properties

Length: 177aa MW: 18582.5 Da PI: 8.4376

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0959s0005.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	36	1.2e-11	7	31	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C++Cr +L YPrGA++V+Ca+C ++ Kalax.0959s0005.1.p 7 CSSCRSILLYPRGATNVCCAICRAI 31 **********************986 PP
2	zf-LSD1	48.3	1.6e-15	46	70	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+Y+rGA+s+RC++C+tV Kalax.0959s0005.1.p 46 CGGCRTLLMYTRGATSIRCSCCHTV 70 ************************9 PP
3	zf-LSD1	49.2	8.6e-16	84	108	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Crt+L+YP+GApsV+Ca+C+ V Kalax.0959s0005.1.p 84 CGNCRTTLMYPYGAPSVKCAICQYV 108 ***********************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	2.6E-11	4	34	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	2.7E-10	7	31	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	1.9E-17	43	72	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	5.3E-13	46	70	IPR005735	Zinc finger, LSD1-type
Gene3D	G3DSA:3.30.40.10	7.3E-4	60	111	IPR013083	Zinc finger, RING/FYVE/PHD-type
TIGRFAMs	TIGR01053	1.7E-13	81	111	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	1.5E-14	84	108	IPR005735	Zinc finger, LSD1-type

Sequence ? help Back to Top
Protein Sequence Length: 177 aa Download sequence Send to blast
MQSQLMCSSC RSILLYPRGA TNVCCAICRA ITSVPPPGME MAQLICGGCR TLLMYTRGAT 60 SIRCSCCHTV NLAPTSNQVA HVNCGNCRTT LMYPYGAPSV KCAICQYVTN VGTSDGRVPI 120 PVSRPNEVSA SSSASSTSTA MPHIQNQTVV VENPMSVDES GKLVSNVVVG VTKDKK*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008225697.1	1e-102	PREDICTED: protein LSD1
Swissprot	Q6ASS2	1e-71	LOL3_ORYSJ; Protein LOL3
TrEMBL	A0A2P5CRE2	1e-101	A0A2P5CRE2_PARAD; Multihem cytochrome
STRING	XP_008225697.1	1e-101	(Prunus mume)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20380.7	3e-71	LSD family protein

Link Out ? help Back to Top
Phytozome	Kalax.0959s0005.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]